biology/spoa: update 4.0.7 → 4.1.0

Reported by:	portscout

biology/spoa/Makefile

@@ -1,6 +1,5 @@
 PORTNAME=	spoa
-DISTVERSION=	4.0.7
-PORTREVISION=	4
+DISTVERSION=	4.1.0
 CATEGORIES=	biology
 
 MAINTAINER=	yuri@FreeBSD.org
@@ -11,7 +10,7 @@ LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	bioparser>0:biology/bioparser \
-		${LOCALBASE}/include/biosoup/nucleic_acid.hpp:biology/biosoup \
+		biosoup>0:biology/biosoup \
 		cereal>0:devel/cereal \
 		simde>0:devel/simde
 LIB_DEPENDS=	libcpu_features.so:devel/cpu_features
@@ -24,8 +23,17 @@ USE_LDCONFIG=	yes
 USE_GITHUB=	yes
 GH_ACCOUNT=	rvaser
 
-CMAKE_ON=	BUILD_SHARED_LIBS spoa_optimize_for_portability spoa_build_executable spoa_use_simde spoa_use_simde_nonvec spoa_use_simde_openmp
-CMAKE_OFF=	spoa_optimize_for_native
+CMAKE_ON=	BUILD_SHARED_LIBS \
+		spoa_build_exe \
+		spoa_optimize_for_portability \
+		spoa_build_executable \
+		spoa_use_simde \
+		spoa_use_simde_nonvec \
+		spoa_use_simde_openmp \
+		spoa_use_cereal \
+		spoa_use_simde_openmp
+CMAKE_OFF=	spoa_optimize_for_native \
+		spoa_build_tests
 
 CXXFLAGS+=	-I${LOCALBASE}/include/cpu_features
 LDFLAGS+=	-lz -lcpu_features

biology/spoa/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1611045674
-SHA256 (rvaser-spoa-4.0.7_GH0.tar.gz) = f8cb409adcca20ca6cc0025371743b915790879957cf001ca5e155ed16fd14e0
-SIZE (rvaser-spoa-4.0.7_GH0.tar.gz) = 43574
+TIMESTAMP = 1693289273
+SHA256 (rvaser-spoa-4.1.0_GH0.tar.gz) = 43238356f00bce2ad9698fc18b3e320024172a82182dcff24d57c5cf19e342c8
+SIZE (rvaser-spoa-4.1.0_GH0.tar.gz) = 47814

biology/spoa/pkg-plist

@@ -1,8 +1,11 @@
 bin/spoa
 include/spoa/alignment_engine.hpp
-include/spoa/architectures.hpp
 include/spoa/graph.hpp
 include/spoa/spoa.hpp
+include/spoa/version.hpp
+lib/cmake/spoa/spoaConfig.cmake
+lib/cmake/spoa/spoaConfigVersion.cmake
+lib/cmake/spoa/spoaTargets-%%CMAKE_BUILD_TYPE%%.cmake
+lib/cmake/spoa/spoaTargets.cmake
 lib/libspoa.so
 lib/libspoa.so.7.0.0
-libdata/pkgconfig/spoa-1.pc