biology/bio-mocha: Update to 1.14-20220112

Upstream incorporated my patches to eliminate nested functions, which are not standard C and pose security risks. A few other minor updated.
freebsd · Jan 13, 2022 · e33f720 · e33f720
1 parent 4b86dc1
commit e33f720
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diff --git a/biology/bio-mocha/Makefile b/biology/bio-mocha/Makefile
@@ -1,9 +1,8 @@
 PORTNAME=	bio-mocha
-DISTVERSION=	1.13
-PORTREVISION=	1
+DISTVERSION=	1.14
 CATEGORIES=	biology
 MASTER_SITES=	https://software.broadinstitute.org/software/mocha/
-DISTFILES+=	${PORTNAME}_${DISTVERSION}-20211015.tar.gz
+DISTFILES+=	${PORTNAME}_${DISTVERSION}-20220112.tar.gz
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	Bcftools plugin for mosaic chromosomal alteration analysis

diff --git a/biology/bio-mocha/distinfo b/biology/bio-mocha/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1640100283
-SHA256 (bio-mocha_1.13-20211015.tar.gz) = e145bb48fea347202e16395ab7d78e7e7314749b8d472a2071f8074004cd63a5
-SIZE (bio-mocha_1.13-20211015.tar.gz) = 73627
-SHA256 (samtools-bcftools-1.13-1.14_GH0.tar.gz) = c9a814b1f0a13af19b45283f039d01b524e011d870ac95cd92e6907c3d1db6d1
-SIZE (samtools-bcftools-1.13-1.14_GH0.tar.gz) = 3326994
+TIMESTAMP = 1642078792
+SHA256 (bio-mocha_1.14-20220112.tar.gz) = 189a522418f12cbb04e6c5ccae130dbae1682907808f4cb594af4ff386651068
+SIZE (bio-mocha_1.14-20220112.tar.gz) = 75910
+SHA256 (samtools-bcftools-1.14_GH0.tar.gz) = c9a814b1f0a13af19b45283f039d01b524e011d870ac95cd92e6907c3d1db6d1
+SIZE (samtools-bcftools-1.14_GH0.tar.gz) = 3326994
diff --git a/biology/bio-mocha/files/patch-plugins_beta__binom.h b/biology/bio-mocha/files/patch-plugins_beta__binom.h