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biology/py-macs2: Update to 2.2.9.1
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Mainly updates to dependencies
Changes: https://github.com/macs3-project/MACS/releases
Added test target

Reported by:    portscout
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Jason W. Bacon authored and Jason W. Bacon committed Aug 6, 2023
1 parent d07382c commit e97c345
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Showing 3 changed files with 14 additions and 32 deletions.
15 changes: 11 additions & 4 deletions biology/py-macs2/Makefile
@@ -1,6 +1,6 @@
PORTNAME= macs2
DISTVERSIONPREFIX= v
DISTVERSION= 2.2.8
DISTVERSION= 2.2.9.1
CATEGORIES= biology python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

Expand All @@ -12,18 +12,25 @@ LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE

BUILD_DEPENDS= ${PYNUMPY}
RUN_DEPENDS= ${PYNUMPY}
RUN_DEPENDS= ${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}cykhash>0:devel/py-cykhash@${PY_FLAVOR}
TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \
bash:shells/bash

USES= python
USES= python shebangfix
USE_GITHUB= yes
USE_PYTHON= autoplist concurrent cython distutils

USE_GITHUB= yes
GH_ACCOUNT= taoliu
GH_PROJECT= MACS
SHEBANG_FILES= test/cmdlinetest_update test/cmdlinetest test/prockreport

post-stage:
${STRIP_CMD} \
${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \
${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so

do-test: install
@cd ${WRKSRC}/test && ./cmdlinetest tag

.include <bsd.port.mk>
6 changes: 3 additions & 3 deletions biology/py-macs2/distinfo
@@ -1,3 +1,3 @@
TIMESTAMP = 1684361836
SHA256 (taoliu-MACS-v2.2.8_GH0.tar.gz) = cab63d7e8b862dbd6bb8ed32325e4fee728d85306e47931167fef753ef0ee743
SIZE (taoliu-MACS-v2.2.8_GH0.tar.gz) = 133108890
TIMESTAMP = 1691269587
SHA256 (taoliu-MACS-v2.2.9.1_GH0.tar.gz) = 8e461dde82288280fe708cd4f5fec986fbf2da67b344f4dea5693af849549163
SIZE (taoliu-MACS-v2.2.9.1_GH0.tar.gz) = 133109075
25 changes: 0 additions & 25 deletions biology/py-macs2/files/patch-setup.py

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