Functional Genomics Notebook Template

This is a template. Create a new repo from it!

Getting Started

0. Install docker and docker-compose. This should get you started depending on your platform.

1. Run docker-compose up --build! (The --build will rebuild the container if you make any changes, ie to the requirements.txt)

docker-compose up --build

2. Copy the link to your local jupyter instance from the terminal and open it in your browser.

Inspiration

• jupyter notebook docker-compose
• On writing clean Jupyter notebooks
• Selecting an Image

Example requirements.txt

biopython
bioconductor-deseq2
r-seurat