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Merge pull request #416 from mpsonntag/deptests
Add dependent library release test scripts
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| ## python-odml convenience scripts | ||
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| This folder contains convenience scripts for build and deployment tests and should not be part of any release. Check the README files in the specific folders for details. | ||
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| The `release_tests` folder contains scripts and resources to test the odML library and all its dependent libraries like odmltools, odmlui, odmlconverter and nix-odml-converter from a local odML installation, from Test-PyPI and PyPI packages. | ||
| The local version tests the installation via `pip install .` and `python setup.py install`. The Test-PyPI and PyPI package tests use conda environments to test the installation with all Python versions >= 3.5. |
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| # odml and odml dependent libraries installation tests | ||
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| Used to document the minimal automated tests for `python-odml` and `odmltools` and not fully automated tests of `odml-ui` installations with a special focus on the execution of command line scripts and gui with different local installation methods. | ||
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| ## Automated odml and dependent library tests | ||
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| The tests include | ||
| - basic odml import and file loading and saving | ||
| - `odml` command line script execution using realistic example files | ||
| - odmlview | ||
| - odmltordf | ||
| - odmlconversion | ||
| - `odmltools` command line script execution | ||
| - odmlimportdatacite | ||
| - basic odml-ui installation | ||
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| ### Local installation tests | ||
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| To test the various local installations of odml, execute `run_test_matrix.sh` with option 'A'. odml will be installed into fresh conda environments using `pip install .` and `python setup.py install` and all Python versions >= 3.5. | ||
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| ### odml PyPI TEST installation tests | ||
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| To test the installation of the odml package from the PyPI TEST repository, execute `run_test_matrix.sh` with option 'B'. odml will be installed into fresh conda environments using `pip install odml` and all Python versions >= 3.5. | ||
| The package `odml-ui` will be installed as well and all installable odml command line scripts will be tested after the odml installation. | ||
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| ### odmltools PyPI server installation tests | ||
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| When executing `run_test_matrix.sh` with option 'C', the odml dependent package `odmltools` will be pip installed into fresh conda environments for all Python versions >= 3.6 from the PyPI TEST repository and appropriate conversion tests will be run using the installed command line tool. | ||
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| ### nixodmlconverter PyPI TEST installation tests | ||
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| When executing `run_test_matrix.sh` with option 'D' the odml dependent package `nixodmlconverter` will be pip installed into fresh conda environments for all Python versions >= 3.6 from the PyPI TEST repository and appropriate conversion tests will be run using the installed command line tool. | ||
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| ### odml PyPI LIVE installation tests | ||
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| To test the installation of the odml package from PyPI proper, execute `run_test_matrix.sh` with option 'E'. odml will be installed into fresh conda environments using `pip install odml` and all Python versions >= 3.5. | ||
| The package `odml-ui` will be installed as well and all installable odml command line scripts will be tested after the odml installation. | ||
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| ## Manual odml-ui tests | ||
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| To set up conda environments and run local or PyPI TEST installations run the script `run_test_matrix.sh` with option `B` from the current directory. | ||
| Once set up, the conda environments can be used to manually test `odml-ui` as well. | ||
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| Activate python installation environment | ||
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| CONDA_ENV_SETUP=pyinst | ||
| CONDA_ENV_PIP=pipinst | ||
| ROOT_DIR=$(pwd) | ||
| cd $ROOT_DIR/resources/test_load | ||
| conda activate ${CONDA_ENV_SETUP} | ||
| odmlui | ||
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| Run the following most tests: | ||
| - open `test_load\load_v1.odml.xml` | ||
| - check fail message | ||
| - import `test_load\load_v1.odml.xml` | ||
| - save as `pyi_conv.xml` | ||
| - save as `pyi_conv.yaml` | ||
| - save as `pyi_conv.json` | ||
| - open `pyi_conv.xml` | ||
| - open `pyi_conv.yaml` | ||
| - open `pyi_conv.json` | ||
| - check importing a terminology using the document wizard | ||
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| Exit and switch to pip environment | ||
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| conda deactivate | ||
| conda activate ${CONDA_ENV_PIP} | ||
| odmlui | ||
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| Run manual tests again | ||
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| Test odmltables plugin | ||
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| pip install odmltables | ||
| pip install odmltables[gui] | ||
| odmlui | ||
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| Run the following minimal tests | ||
| - open `pyi_conv.xml` | ||
| - use odmltables `convert` button, save as csv file | ||
| - use odmltables `filter` button | ||
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| Exit, move back to the root and cleanup | ||
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| cd $ROOT_DIR | ||
| conda deactivate | ||
| rm $ROOT_DIR/resources/test_load/load_v1.odml_converted.xml | ||
| rm $ROOT_DIR/resources/test_load/pyi_conv.json | ||
| rm $ROOT_DIR/resources/test_load/pyi_conv.xml | ||
| rm $ROOT_DIR/resources/test_load/pyi_conv.yaml |
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| import sys | ||
| import unittest | ||
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| try: | ||
| # Test possible imports of all parsers without importing the full odML package | ||
| from odml.tools import ODMLReader, ODMLWriter, RDFReader, RDFWriter | ||
| from odml.tools.converters import FormatConverter, VersionConverter | ||
| from odml.tools import XMLReader, XMLWriter, DictReader, DictWriter | ||
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| import odml | ||
| except Exception as exc: | ||
| print("-- Failed on an import: %s" % exc) | ||
| sys.exit(-1) | ||
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| class TestODMLBasics(unittest.TestCase): | ||
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| def test_load(self): | ||
| print("-- Load odml xml file") | ||
| xdoc = odml.load('./load.odml.xml') | ||
| print(xdoc.pprint()) | ||
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| print("-- Load odml json file") | ||
| jdoc = odml.load('./load.odml.json', 'JSON') | ||
| self.assertEqual(xdoc, jdoc) | ||
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| print("-- Load odml yaml file") | ||
| ydoc = odml.load('./load.odml.yaml', 'YAML') | ||
| self.assertEqual(xdoc, ydoc) | ||
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| print("-- Document loading tests success") | ||
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| def test_version_load(self): | ||
| print("-- Test invalid version exception xml file load") | ||
| with self.assertRaises(odml.tools.parser_utils.InvalidVersionException): | ||
| _ = odml.load('./load_v1.odml.xml') | ||
| print("-- Invalid version loading test success") | ||
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| def test_tools_init(self): | ||
| _ = ODMLReader() | ||
| _ = ODMLWriter() | ||
| _ = RDFReader() | ||
| _ = RDFWriter([odml.Document()]) | ||
| _ = FormatConverter() | ||
| _ = VersionConverter("/I/do/not/exist.txt") | ||
| _ = XMLReader() | ||
| _ = XMLWriter(odml.Document()) | ||
| _ = DictReader() | ||
| _ = DictWriter() | ||
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| if __name__ == "__main__": | ||
| try: | ||
| svi = sys.version_info | ||
| print("-- Using Python '%s.%s.%s'" % (svi.major, svi.minor, svi.micro)) | ||
| print("-- Testing odml Version: '%s'" % odml.VERSION) | ||
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| unittest.main() | ||
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| except Exception as exc: | ||
| print("-- Failed on a test: %s" % exc) | ||
| sys.exit(-1) |
Oops, something went wrong.