Analyzing Clinical and Genomic Oncological Data with {genieBPC}

The materials provided are intended to accompany the demo presented the 2024 Statistical Practice in Cancer Conference Program (SPCC) and the AACR Annual Meeting 2024.

• SPCC slides are available at: https://github.com/GENIE-BPC/intro_to_genieBPC/blob/main/genieBPC_SPCC_2024.pdf
• AACR slides are available at: https://github.com/GENIE-BPC/intro_to_genieBPC/blob/main/genieBPC_AACR_Annual_Meeting_2024_v2.pdf

Authors

• Samantha Brown
• Jessica Lavery

Thank you to Hannah Fuchs and Karissa Whiting for their contributions to this presentation.

Instructions for registering for a Synapse account to access GENIE BPC data

1. Register for a ‘Synapse’ account. Be sure to create a username and password. Do NOT connect via your Google account.

   a) https://www.synapse.org/#

2. Accept the Synapse account terms of use.

3. Navigate to GENIE Biopharma Collaborative Public page.

   a) https://www.synapse.org/#!Synapse:syn27056172/wiki/616601

4. In the Files folder, navigate to Data Releases --> NSCLC --> 2.0-public.

5. Select Request Access, review the terms of data use and click Accept.

References

Jessica A Lavery, Samantha Brown, Michael A Curry, Axel Martin, Daniel D Sjoberg, Karissa Whiting, A data processing pipeline for the AACR project GENIE biopharma collaborative data with the {genieBPC} R package, Bioinformatics, Volume 39, Issue 1, January 2023, btac796, https://doi.org/10.1093/bioinformatics/btac796