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Adding ASCAT SM reader and matlab util for clim_stats #656

Merged
merged 107 commits into from
Dec 24, 2023
Merged

Adding ASCAT SM reader and matlab util for clim_stats #656

merged 107 commits into from
Dec 24, 2023

Commits on Dec 13, 2022

  1. update clsm_ensupd_read_obs.F90

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  2. update clsm_ensupd_glob_param

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Commits on Dec 14, 2022

  1. update componentsyaml and cmakelists

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  2. trying to build with bufr

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  3. update GEOSlandassim_GridComp CMakeLists.txt

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Commits on Dec 21, 2022

  1. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Dec 22, 2022

  1. update LDASsa_DEFAULT_inputs_ensupd.nml

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Commits on Jan 27, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Jan 31, 2023

  1. Add tpcx and iwfr QC

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  2. Merge branch 'feature/amfox/metop_sm' of github.com:GEOS-ESM/GEOSldas… 

    … into feature/amfox/metop_sm
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  3. fix CMakeLists in Shared

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  4. updating varname to sfds

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Commits on Feb 1, 2023

  1. change N_slect_varnames

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  2. deliberate breaking for test

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    amfox37 committed Feb 1, 2023
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  3. sfds fix

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Commits on Feb 2, 2023

  1. units in nml and combine case

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Commits on Mar 3, 2023

  1. temp fixes to reader

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Commits on Mar 8, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Mar 14, 2023

  1. minor bug fixes

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  2. update Shared_CMakelists

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Commits on Mar 20, 2023

  1. relaxed QC

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Commits on Mar 22, 2023

  1. making things generic

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Commits on Mar 27, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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  2. add metop-C

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Commits on Mar 28, 2023

  1. quick fix

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Commits on Mar 29, 2023

  1. fix typo

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  2. write out to netcdf

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Commits on Apr 17, 2023

  1. temporary test reader

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  2. Merge branch 'feature/amfox/metop_sm' of https://github.com/GEOS-ESM/… 

    …GEOSldas into feature/amfox/metop_sm
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  3. Merge branch 'develop' into feature/amfox/metop_sm

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  4. add obs lat, lon, time to EUMETSAT reader output

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Commits on Apr 19, 2023

  1. add scale_obs_sfmc_zscore template

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  2. fix typoes

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Commits on Apr 20, 2023

  1. add netcdf sclprm read

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  2. nf_ to nf90_

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  3. sort out get_var for 3D array

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Commits on Apr 21, 2023

  1. scale via standard normal deviates

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Commits on Apr 25, 2023

  1. sort out netcdf dimensions

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  2. more netcdf read issues

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Commits on Apr 28, 2023

  1. sorted netcdf read for 2D grids

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Commits on Apr 30, 2023

  1. new latlon-grid based statistics

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  2. Merge branch 'develop' into feature/amfox/metop_sm

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  3. Merge branch 'develop' into feature/amfox/generic_get_model_and_obs_c… 

    …lim_stats
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Commits on May 1, 2023

  1. add ncdump header comment to netcdf write

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Commits on May 22, 2023

  1. adding pentads latlon

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  2. fix conflict in get_ij_ind_from_latlon.m

    @amfox37
    amfox37 committed May 22, 2023
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  3. remove some debug output

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  4. Merge branch 'feature/amfox/metop_sm' of github.com:GEOS-ESM/GEOSldas… 

    … into feature/amfox/metop_sm
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Commits on May 26, 2023

  1. Merge branch 'feature/amfox/generic_get_model_and_obs_clim_stats' int… 

    …o feature/amfox/metop_sm
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  2. Merge branch 'develop' into feature/amfox/metop_sm

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  3. bug fix

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Commits on May 31, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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  2. added timing statements

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  3. fix corruption of LDAS_TileCoordRoutines.F90

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Commits on Jun 1, 2023

  1. system_clock calls

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  2. Merge branch 'feature/amfox/metop_sm' of https://github.com/GEOS-ESM/… 

    …GEOSldas into feature/amfox/metop_sm
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Commits on Jun 2, 2023

  1. clean up obs_scaling_param directory

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  2. timing statements

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Commits on Jun 6, 2023

  1. switch to fname list reader

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  2. Merge branch 'feature/amfox/metop_sm' of https://github.com/GEOS-ESM/… 

    …GEOSldas into feature/amfox/metop_sm
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  3. timing in read_obs

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  4. Merge branch 'feature/amfox/metop_sm' of github.com:GEOS-ESM/GEOSldas… 

    … into feature/amfox/metop_sm
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Commits on Jun 8, 2023

  1. fname from list working but slow

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Commits on Jun 11, 2023

  1. fname list read working and tidied

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Commits on Jun 15, 2023

  1. fix date_time_low_fname bug

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Commits on Jun 21, 2023

  1. reinstate exit on error

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Commits on Jun 23, 2023

  1. add dt_ASCAT_obsfile parameter

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Commits on Jun 26, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Jul 20, 2023

  1. read all subsets to memory before qc

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  2. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Sep 19, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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  2. changed defaults of %bias_trel and %bias_tcut for ASCAT sm retrievals… 

    … in LDASsa_DEFAULT_inputs_ensupd.nml (not used, but changed for consistency with other obs species)
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Commits on Sep 20, 2023

  1. cleanup of subroutine read_obs_sm_ASCAT_EUMET() in clsm_ensupd_read_o… 

    …bs.F90:

- removed obsolete variables
- improved documentation
- fixed units error
- cleaned-up indentation
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Commits on Sep 21, 2023

  1. Review response 

    - change half-open interval comment
- read_obs_SMAP_fnames -> read_obs_fnames
- optional argument in read_obs_fnames to write YYYY/MM/filename
- update date from string parse to reflect this change
- add error out if maxobs exceeded
- add /100. after initial read of errstd
    @amfox37
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Commits on Sep 22, 2023

  1. Remove asc v desc species differentiation 

    - remove bufr read of DOMO and its use to differentiate orbits in qc
- update default nml for three species
- change error to 9% in nml
- change N_obs_species_nml to 51
    @amfox37
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  2. Fix dimension size in ufbint call

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  3. fix tmp_vdata dimension

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  4. additional clean-up of ASCAT EUMETSAT BUFR reader

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  5. removed obsolete variable declaration (clsm_ensupd_read_obs.F90)

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Commits on Sep 29, 2023

  1. increase max_rec size

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Commits on Oct 3, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Oct 26, 2023

  1. add range to scaled obs

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  2. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Oct 27, 2023

  1. add latlon grid clim stats matlab scripts

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Commits on Oct 30, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Nov 7, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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  2. make update type 1 work

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  3. Merge branch 'feature/amfox/metop_sm' of github.com:GEOS-ESM/GEOSldas… 

    … into feature/amfox/metop_sm
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Commits on Nov 9, 2023

  1. update NCEP_Shared to v1.3.0

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Commits on Nov 13, 2023

  1. Merge branch 'feature/amfox/metop_sm' of github.com:GEOS-ESM/GEOSldas… 

    … into feature/amfox/metop_sm
    @amfox37
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Commits on Nov 22, 2023

  1. allocation of mwRTM_param

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  2. bugfix for ASCAT_sm_std

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Commits on Nov 30, 2023

  1. minimal edits of comment lines in ASCAT reader (clsm_ensupd_read_obs.… 

    …F90)
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Commits on Dec 3, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Dec 7, 2023

  1. Merge branch 'develop' into feature/amfox/metop_sm

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  2. Merge branch 'develop' into feature/amfox/metop_sm

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Commits on Dec 18, 2023

  1. minimal update to comments (clsm_ensupd_upd_routines.F90)

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  2. minimal edits of comments, a few white-space changes (clsm_ensupd_rea… 

    …d_obs.F90)
    @gmao-rreichle
    gmao-rreichle committed Dec 18, 2023
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  3. added minor comment to (ASCAT) sfmc zscore scaling subroutine (clsm_e… 

    …nsupd_read_obs.F90)
    @gmao-rreichle
    gmao-rreichle committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. moved lines with user-defined inputs into corresponding block of code

    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  2. cleanup of functions to get obs scaling parameters (get_model_and_obs… 

    …_clim_stats*.m):

- fixed indentation
- improved vertical alignment of equations
- minor edits of comments
- removed obsolete code
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  3. minimal white space changes (get_tile_num_for_obs.m, pentad_of_year.m)

    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  4. cleanup of netcdf writer for (ASCAT) obs scaling parameters (write_ne… 

    …tcdf_latlon_grid.m):

- fixed indentation
- improved vertical alignment of equations
- fixed typo in 'long_name' of 'lat', 'lon' variables
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  5. replaced deprecated Matlab functions "nanmean", "nanstd", and "nansum… 

    …" with "mean", "std", and "sum"; avoids dependency on Stats toolbox (various *.m)
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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  6. construct "ldas_obsparam" file name from user-defined inputs (Run_get… 

    …_model_and_obs_clim_stats_latlon_grid.m)
    @gmao-rreichle
    gmao-rreichle committed Dec 19, 2023
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Commits on Dec 22, 2023

  1. fix bad no-data check (get_model_and_obs_clim_stats*.m)

    @gmao-rreichle
    gmao-rreichle committed Dec 22, 2023
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  2. remove lat lon vectors from matlab write 

    remove lat lon vectors from read_obs
remove insane sanity check
    @amfox37
    amfox37 committed Dec 22, 2023
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