Auto PR - develop → MAPL-v3 - update repos, add option to ldas_setup

.circleci/config.yml

@@ -1,7 +1,7 @@
 version: 2.1
 
 # Anchor to prevent forgetting to update a version
-baselibs_version: &baselibs_version v7.13.0
+baselibs_version: &baselibs_version v7.16.0
 
 orbs:
   ci: geos-esm/circleci-tools@1

README.md

@@ -4,7 +4,7 @@ This document explains how to build, set up, and run the GEOS land modeling and
 
 ## How to Build GEOSldas
 
-### Step 1: Load the Build Modules  
+### Step 1: Load the Build Modules
 
 Load the `GEOSenv` module provided by the GMAO Software Infrastructure team.  It contains the latest `git`, `CMake`, and `mepo` modules and must be loaded in any interactive window that is used to check out and build the model.
 
@@ -13,7 +13,7 @@ module use -a (path)
 module load GEOSenv
 ```
 
-where `(path)` depends on the computer and operating system: 
+where `(path)` depends on the computer and operating system:
 
 | System        | Path                                              |
 | ------------- |---------------------------------------------------|
@@ -28,7 +28,7 @@ For development work, clone the _entire_ repository and use the `develop` branch
 ```
 git clone -b develop git@github.com:GEOS-ESM/GEOSldas.git
 ```
-For science runs, you can also obtain a specific tag or branch _only_ (as opposed to the _entire_ repository), e.g.: 
+For science runs, you can also obtain a specific tag or branch _only_ (as opposed to the _entire_ repository), e.g.:
 ```
 git clone -b v17.9.1 --single-branch git@github.com:GEOS-ESM/GEOSldas.git
 ```
@@ -40,10 +40,10 @@ To build the model in a single step, do the following:
 ```
 cd ./GEOSldas
 parallel_build.csh
-``` 
-from a head node. Doing so will check out all the external repositories of the model (albeit only on the first run, [see subsection on mepo below](#mepo)!) and build the model. When done, the resulting model build will be found in `build/` and the installation will be found in `install/`, with setup scripts like `ldas_setup` in `install/bin`. 
+```
+from a head node. Doing so will check out all the external repositories of the model (albeit only on the first run, [see subsection on mepo below](#mepo)!) and build the model. When done, the resulting model build will be found in `build-SLES12/` and the installation will be found in `install-SLES12/`, with setup scripts like `ldas_setup` in `install-SLES12/bin`.
 
-To obtain a build that is suitable for debugging, use `parallel_build.csh -debug`, which will build in `build-Debug/` and install in `install-Debug/`.  There is also an option for aggressive  optimization.  For details, see [GEOSldas Wiki](https://github.com/GEOS-ESM/GEOSldas/wiki).
+To obtain a build that is suitable for debugging, use `parallel_build.csh -debug`, which will build in `build-Debug-SLES12/` and install in `install-Debug-SLES12/`.  There is also an option for aggressive  optimization.  For details, see [GEOSldas Wiki](https://github.com/GEOS-ESM/GEOSldas/wiki).
 
 See below for how to build the model in multiple steps.
 
@@ -57,7 +57,7 @@ a) Set up the job as follows:
 cd (build_path)/GEOSldas/install/bin
 source g5_modules                        [for bash or zsh: source g5_modules.[z]sh]
 ./ldas_setup setup [-v]  (exp_path)  ("exe"_input_filename)  ("bat"_input_filename)
-```  
+```
 
 where
 
@@ -70,14 +70,14 @@ where
 
 The three arguments for `ldas_setup` are positional and must be ordered as indicated above.
 
-The latter two files contain essential information about the experiment setup. 
+The latter two files contain essential information about the experiment setup.
 Sample files can be generated as follows:
-```        
+```
 ldas_setup sample --exeinp > YOUR_exeinp.txt
 ldas_setup sample --batinp > YOUR_batinp.txt
 ```
 
-Edit these sample files following the examples and comments within the sample files.  
+Edit these sample files following the examples and comments within the sample files.
 
 The ldas_setup script creates a run directory and other directories at:
 `[exp_path]/[exp_name]`
@@ -156,7 +156,7 @@ and CMake will install there.
 ```
 make -j6 install
 ```
-If you are at NCCS, you **should** run `make -j6 install` on an interactive _compute_ node.  
+If you are at NCCS, you **should** run `make -j6 install` on an interactive _compute_ node.
 
 
 ## Contributing

components.yaml

@@ -5,13 +5,13 @@ GEOSldas:
 env:
   local: ./@env
   remote: ../ESMA_env.git
-  tag: v4.17.0
+  tag: v4.23.0
   develop: main
 
 cmake:
   local: ./@cmake
   remote: ../ESMA_cmake.git
-  tag: v3.30.0
+  tag: v3.36.0
   develop: develop
 
 ecbuild:
@@ -22,20 +22,20 @@ ecbuild:
 GMAO_Shared:
   local: ./src/Shared/@GMAO_Shared
   remote: ../GMAO_Shared.git
-  tag: v1.9.1
+  tag: v1.9.6
   sparse: ./config/GMAO_Shared.sparse
   develop: main
 
 GEOS_Util:
   local: ./src/Shared/@GMAO_Shared/@GEOS_Util
   remote: ../GEOS_Util.git
-  tag: v2.0.2
+  tag: v2.0.3
   develop: main
 
 MAPL:
   local: ./src/Shared/@MAPL
   remote: ../MAPL.git
-  tag: v2.39.4
+  tag: v2.42.1
   develop: develop
 
 GEOSgcm_GridComp:

src/Applications/LDAS_App/ldas_setup

@@ -1335,8 +1335,6 @@ class LDASsetup:
                         fout.write(line_.replace('MY_NTASKS_PER_NODE',str(self.rqdRmInp['ntasks-per-node'])))
                         if int(self.rqdRmInp['ntasks-per-node']) > 40:
                            fout.write("#SBATCH --constraint=cas\n")
-                        if (28 < int(self.rqdRmInp['ntasks-per-node']) and int(self.rqdRmInp['ntasks-per-node']) <= 40) :
-                           fout.write("#SBATCH --constraint=sky\n")
                     elif 'MY_OSERVER_NODES' in line :
                         fout.write(line.replace('MY_OSERVER_NODES',str(self.optRmInp['oserver_nodes'])))
                     elif 'MY_WRITERS_NPES' in line :
@@ -1609,9 +1607,9 @@ def _printRmInputKeys(rqdRmInpKeys, optRmInpKeys):
     print ('#                      [At NCCS: Use command "getsponsor" to see available account number(s).]' )
     print ('# - walltime         = walltime requested; format is HH:MM:SS (hours/minutes/seconds)')
     print ('# - ntasks_model     = number of processors requested for the model (typically 112; output server is not included)')
-    print ('# - ntasks-per-node  = number of tasks per node (typically 46 for cascade lake*, 40 for skylake, and 28 for haswell nodes)')
-    print ('#                      [If >40, cascade lake nodes will be allocated, if >28, cascade or skylake, else cascade, skylake or haswell.]')
-    print ('#                      [*NCCS recommends <=46 cores per node on SCU16 (cascade lake) due to OS issues (as of 6 Oct 2021).]')
+    print ('# - ntasks-per-node  = number of tasks per node (typically 46 for cascade* and 40 for skylake nodes)')
+    print ('#                      [If >40, cascade nodes will be allocated, else cascade or skylake.]')
+    print ('#                      [*NCCS recommends <=46 cores per node on SCU16 (cascade) due to OS issues (as of 6 Oct 2021).]')
     print ('#')
     for key in rqdRmInpKeys:
         print (key + ':')