/
oryza.synconf.disabled
executable file
·41 lines (31 loc) · 1.42 KB
/
oryza.synconf.disabled
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[GENERAL]
description = BLASTZ alignments for Oryza sativa
# The synteny database
join_adaptor = Bio::DB::Synteny::Store
join_args = -dsn dbi:mysql:database=rice_synteny;host=localhost
-adaptor DBI::mysql
# This option maps the relationship between the species data sources, names and descriptions
# The value for "name" (the first column) is the symbolic name that gbrowse_syn users to identify each species.
# This value is also used in two other places in the gbrowse_syn configuration:
# the species name in the "examples" directive and the species name in the .aln file
# The value for "conf. file" is the basename of the corresponding gbrowse .conf files.
# This value is also used to identify the species configuration stanzas at the bottom of the configuration file.
# name conf. file Description
source_map = rice rice_synteny "Domesic Rice (O. sativa)"
wild_rice wild_rice_synteny "Wild Rice"
tmpimages = /tmp/gbrowse2
imagewidth = 800
stylesheet = /gbrowse2/css/gbrowse_transparent.css
cache time = 1
config_extension = conf
# example searches to display
examples = rice 3:16050173..16064974
wild_rice 3:1..400000
zoom levels = 5000 10000 25000 50000 100000 200000 400000
# species-specific databases
[rice_synteny]
tracks = EG
color = blue
[wild_rice_synteny]
tracks = EG
color = red