@GMOD

Generic Model Organism Database Project

  • A modern genome browser built with JavaScript and HTML5.

    JavaScript 274 151 LGPL-2.1 18 issues need help Updated Sep 24, 2018
  • Read Tabix-indexed files, either with .tbi or .csi indexes

    JavaScript MIT Updated Sep 24, 2018
  • Read htsjdk tribble indexes in pure JS

    JavaScript MIT Updated Sep 24, 2018
  • Parse BAM and BAM index files in javascript for node and the browser

    JavaScript 1 MIT Updated Sep 24, 2018
  • Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    Groovy 52 48 5 issues need help Updated Sep 24, 2018
  • the GMOD database schema

    PLpgSQL 14 12 Updated Sep 20, 2018
  • Nodejs filehandle for reading bgzip+.gzi compressed files

    JavaScript MIT Updated Sep 19, 2018
  • JBConnect, an optional server-side component of JBrowse

    JavaScript 1 Updated Sep 14, 2018
  • Jupyter Notebook widget that will automatically launch genome widgets

    JavaScript 2 Updated Sep 14, 2018
  • JBrowse/Galaxy-Blast Plugin (Work-in-progress)

    CSS 3 1 Updated Sep 10, 2018
  • High performance VCF parser in pure JavaScript

    JavaScript MIT Updated Sep 9, 2018
  • Read CRAM v3 and v2 in node or in the browser

    JavaScript 5 2 MIT Updated Sep 6, 2018
  • A fork of binary-parser for usage in GMOD data parsers

    JavaScript 48 MIT Updated Sep 5, 2018
  • JavaScript MIT Updated Sep 4, 2018
  • parse and format streams of GFF3, for node or webpack

    JavaScript 2 1 MIT Updated Sep 1, 2018
  • Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component

    JavaScript 3 Updated Aug 23, 2018
  • Generate GD images of biological sequences and annotations

    Perl 8 12 Updated Aug 23, 2018
  • Read .2bit files with pure JS. Works in node or webpack.

    JavaScript MIT Updated Aug 3, 2018
  • 🐳 Apollo 2.X Docker Image

    Groovy 3 11 GPL-3.0 Updated Aug 3, 2018
  • JBrowse Plugin Registry

    HTML 13 8 BSD-2-Clause Updated Jul 18, 2018
  • scripts to automagically create a JBrowse instance from an Ensembl FTP URL

    Perl MIT Updated Jun 29, 2018
  • Perl modules for working with a Chado schema

    Perl Updated Apr 30, 2018
  • the Generic Genome Browser

    Perl 38 32 Updated Apr 6, 2018
  • Perl 8 6 Updated Apr 6, 2018
  • Python library for talking to Apollo API

    Python 6 MIT Updated Nov 30, 2017
  • TypeScript 1 Updated Oct 24, 2017
  • A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.

    Perl 3 GPL-2.0 Updated Oct 2, 2017
  • Coordinate transformation library used by Apollo.

    Groovy 1 Updated Jun 8, 2017
  • JBrowse docker project

    Shell 2 Updated May 2, 2017
  • Genome projection library

    Groovy 1 BSD-3-Clause Updated Feb 21, 2017