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@GP2code

Global Parkinson's Genetics Program - Code

https://parkinsonsroadmap.org/gp2/
README.md

Official GP2 Code Organization and Repositories

Welcome to the official Global Parkinson's Genetics Program (GP2) code repositories!

Current Release

Our latest release is release 7, last updated April 2024.

  • Blog post: https://gp2.org/the-components-of-gp2s-seventh-data-release/
  • DOI: 10.5281/zenodo.10962119
  • When using GP2 release 7 data please use the following acknowledgement:
    • “Data (DOI 10.5281/zenodo.10962119, release 7) used in the preparation of this article were obtained from the Global Parkinson’s Genetics Program (GP2).”

Additional details will be added soon

Pinned Loading

  1. GenoTools GenoTools Public

    Forked from dvitale199/GenoTools

    A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT

    Python 12 3

  2. GP2-WorkingGroups GP2-WorkingGroups Public

    These are repositories and projects directly from GP2 members

    WDL 2

  3. NeuroBoosterArray NeuroBoosterArray Public

    Forked from mikeDTI/GloboNeuroArray

    Process and code for building content lists for NeuroBoosterArray.

  4. releases releases Public

    Code from various GP2 releases in perpetuity.

    WDL 1 1

Repositories

Showing 10 of 18 repositories
  • NeuroBoosterArray Public Forked from mikeDTI/GloboNeuroArray

    Process and code for building content lists for NeuroBoosterArray.

    GP2code/NeuroBoosterArray’s past year of commit activity
    0 1 0 0 Updated Jul 11, 2024
  • GenoTools Public Forked from dvitale199/GenoTools

    A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT

    GP2code/GenoTools’s past year of commit activity
    Python 12 Apache-2.0 7 0 0 Updated Jun 7, 2024
  • GP2-WorkingGroups Public

    These are repositories and projects directly from GP2 members

    GP2code/GP2-WorkingGroups’s past year of commit activity
    WDL 0 2 0 0 Updated May 13, 2024
  • releases Public

    Code from various GP2 releases in perpetuity.

    GP2code/releases’s past year of commit activity
    WDL 1 1 0 0 Updated May 6, 2024
  • .github Public
    GP2code/.github’s past year of commit activity
    0 0 0 0 Updated May 6, 2024
  • multiancestry-PRS_PRSice Public
    GP2code/multiancestry-PRS_PRSice’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 3, 2024
  • chrM.2158-analysis Public

    Investigating the protective role of the mitochondrial 2158 T > C variant in Parkinson’s disease

    GP2code/chrM.2158-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 22, 2024
  • LTFinFoxInsight Public

    Repository of code used for manuscript "Risk Factors for Attrition in an Online Longitudinal Study on Parkinson’s Disease"

    GP2code/LTFinFoxInsight’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 23, 2024
  • GBA1-rs3115534-branchpoint Public

    This is the online repository for the manuscript titled "African ancestry neurodegeneration risk variant disrupts an intronic branchpoint in GBA1"

    GP2code/GBA1-rs3115534-branchpoint’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 11, 2024
  • GP2-AFR-AAC-metaGWAS Public

    All materials for "Genome-wide Association Identifies Novel Etiological Insights Associated with Parkinson’s Disease in African and African Admixed Populations"

    GP2code/GP2-AFR-AAC-metaGWAS’s past year of commit activity
    Jupyter Notebook 3 1 1 0 Updated Jan 9, 2024
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