This respoitory contains all the sourcecode required to run the OCTAVA software
In order to install the software for editing, please follow the following instructions:
- Downoald OCTAVA.mlapp and the folder sripts into your local directory
- Copy the ImageJ/FIJI installation and source files into your directory If you are downloading the latest version of ImageJ, you may need to update the copoytoImgPlus macro. update copytoImgPlus in path .../ImageJ/Fiji/scripts by pulling: https://github.com/fiji/fiji/blob/master/scripts/copytoImgPlus.m
- Save mij.jar and imagej-matlab-0.7.2 in the ImageJ folder
- Save OCTAVA.ijm into the folder ...ImageJ\Fiji\macros\OCTAVA Tools. You may need to create the folder named ¨OCTAVA Tools¨.
Pre-compiled MATLAB app and standalone versions of OCTAVA are available at https://sourceforge.net/projects/octava/
Rights and Permisisons
OCTAVA employs the following existing software packages
-
ImageJ (pulblicly available) ImageJ (http://rsb.info.nih.gov/ij/) is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine. Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux. The author, Wayne Rasband (wayne@codon.nih.gov), is at the Research Services Branch, National Institute of Mental Health, Bethesda, Maryland, USA.
-
Angiogenesis analyzer in ImageJ
Written by Gilles Carpentier, 2008. The macro is available at http://rsb.info.nih.gov/ij/macros/toolsets/Dot%20Blot%20Analyzer.txt and more information can be found at http://image.bio.methods.free.fr/dotblot.html). -
ImageJ-MATLAB package Freely available extension to ImageJ2 (http://imagej.net/Downloads). Installation and use instructions available at http://imagej.net/MATLAB_Scripting. Tested with ImageJ 2.0.0-rc-54, Java 1.8.0_66 and MATLAB R2015b. More information is available at https://doi.org/10.1093/bioinformatics/btw681.