What is JLOH?
JLOH (/jay'lo/) is a tool to extract, filter, and analyse loss of heterozygosity (LOH) blocks based on single-nucleotide polymorphisms (VCF), read mapping information (BAM), and a reference genome sequence (FASTA).
A publication is currently being reviewed. The preprint can be found in bioRxiv (Schiavinato et al., 2023).
usage/installation usage/quickstart usage/run_test_data usage/model_snp_density usage/hybrid_wf usage/one_parent
usage/modules/Extraction/stats usage/modules/Extraction/g2g usage/modules/Extraction/extract
usage/modules/Operations/filter usage/modules/Operations/intersect usage/modules/Operations/chimeric usage/modules/Operations/junctions usage/modules/Operations/cluster
usage/modules/Visualization/plot
usage/modules/Simulation/sim