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Merge release/0.8.1 back into develop for release 0.8.1 (mckinsey#96)
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* Hotfix/0.4.3 (mckinsey#7) - Address broken links and grammar

* Fix documentation links in README (mckinsey#2)

* Fix links in README

* library -> libraries

* Fix github link in docs

* Clean up grammar and consistency in documentation (mckinsey#4)

* Clean up grammar and consistency in `README` files

* Add esses, mostly

* Reword feature description to not appear automatic

* Update docs/source/05_resources/05_faq.md

Co-Authored-By: Ben Horsburgh <benhorsburgh@outlook.com>

Co-authored-by: Ben Horsburgh <benhorsburgh@outlook.com>

* hotfix/0.4.3: fix broken links

Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>

* Release/0.5.0

* Plotting now backed by pygraphviz. This allows:
   * More powerful layout manager
   * Cleaner fully customisable theme
   * Out-the-box styling for different node and edge types
* Can now get subgraphs from StructureModel containing a specific node
* Bugfix to resolve issue when fitting CPDs with some missing states in data
* Minor documentation fixes and improvements

* Release/0.6.0

* Release/0.7.0 (mckinsey#57)

* Added plottting tutorial to the documentation
* Updated `viz.draw` syntax in tutorial notebooks
* Bugfix on notears lasso (`from_numpy_lasso` and `from_pandas_lasso`) where the non-negativity constraint was not being set
* Added DAG-based synthetic data generator for mixed types (binary, categorical, continuous) using a linear SEM approach.
* Unpinned some requirements

* Release/0.8.0 (mckinsey#80)

* Merge back to develop

* Simplifying viz.draw syntax in tutorial notebook (mckinsey#46)

* Add non negativity constraint in numpy lasso (mckinsey#41)

* Add plotting tutorial to the documentation (mckinsey#47)

* Unpin some requirements

* Mixed type data generation (mckinsey#55)

Added DAG-based synthetic data generator for mixed types (binary, categorical, continuous) using a linear SEM approach.

* Merge back to develop (mckinsey#59)

* Pytorch NOTEARS (mckinsey#63)

* NoTears as ScoreSolver

* refactor continuous solver

* adding attribute to access weight matrix

* refactoring continuous solver

* Adding fit_lasso method

* add data_gen_continuous.py and tests (mckinsey#38)

* add data_gen.py

* rename

* wrap SM

* move data_gen_continous, create test

* more coverage

* test fixes

* move discrete sem to another file

* node list dupe check test

* ValueError tests

* replace dag and sem functions with Ben's verions

* add Ben's tests

* fix fstring

* to_numpy_array coverage

* Ben's comments

* remove unreachable ValueError for coverage

* remove unused fixture

* remove redundant test

* remove extensions

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* docstring

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* docstring

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* docs

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* doc

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* rename file, g_dag rename to sm

* add new tests for equal weights

* docstring

* steve docstring, leq fix

* steve comments + docstrings

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* Adding check input and removing some inner functions

* Removing attribute original_ndarray

* Aligning from pandas with new implementation

* Adding tests for fit_lasso

* More tests for lasso

* wrapping tabu params in a dict

* Aligning tests with new tabu params

* Aligning from_pandas with new tabu_params

* Adding fit_intercept option to _fit method

* Adding scaling option

* fixing lasso tests

* Adding a test for fit_intercept

* scaling option only with mean

* Correction in lasso bounds

* Fix typos

* Remove duplicated bounds function

* adding comments

* add torch files from xunzheng

* add from_numpy_torch function that works like from_numpy_lasso

* lint

* add requirements

* add debug functionality

* add visual debug test

* add license

* allow running as main for viz, comments

* move to contrib

* make multi layer work a bit better

* add comment for multi layer

* use polynomial dag constraint for better speed comparison

* revert unnecessary changes to keep PR lean

* revert unnecessary changes to keep PR lean

* revert unnecessary changes to keep PR lean

* fixes

* refactor

* Integrated tests

* Checkpoint

* Refactoring

* Finished initial refactoring

* All tests passed

* Cleaning

* Git add testing

* Get adjacency matrix

* Done cleaning

* Revert change to original notears

* Revert change to original structuremodel

* Revert change to pylintrc

* Undo deletion

* Apply suggestions from Zain

Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* Addressed Zain comments

* Migrated from_numpy

* Delete contrib test

* Migrated w_threshold

* Some linting

* Change to None

* Undo deletion

* List comprehension

* Refactoring scipy and remove scipy optimiser

* Refactoring

* Refactoring

* Refactoring complete

* change from np to torch tensor

* More refactoring

* Remove hnew equal to None

* Refactor again and remove commented line

* Minor change

* change to params

* Addressing Philip's comment

* Add property

* Add fc2 property weights

* Change to weights

* Docstring

* Linting

* Linting completed

* Add gpu code

* Add gpu to from_numpy and from_pandas

* cuda 0 run out of memory

* Debugging

* put 5

* debugging gpu

* shift to inner loop

* debugging not in place

* Use cada instead of to

* Support both interfaces

* Benchmarking gpu

* Minor fix

* correct import path for test

* change gpu from 5 to 1

* Debugging

* Debugging

* Experimenting

* Linting

* Remove hidden layer and gpu

* Linting

* Testing and linting

* Correct pytorch to torch

* Add init zeros

* Change weight threshold to 0.25

* Revert requirements.txt

* Update release.md

* Address coments

* Corrected release.md

* fc1 to adjacency

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>
Co-authored-by: LiseDiagneQB <60981366+LiseDiagneQB@users.noreply.github.com>
Co-authored-by: Casey Juanxi Li <50737712+caseyliqb@users.noreply.github.com>
Co-authored-by: qbphilip <philip.pilgerstorfer@quantumblack.com>
Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* Pinned sphinx-auto-doc-typehints (mckinsey#66)

* Corrected a spelling/grammar mistake (mckinsey#55)

* Fix/lint (mckinsey#73)

* Hotfix/0.4.3 (mckinsey#7) - Address broken links and grammar

* Fix documentation links in README (mckinsey#2)

* Fix links in README

* library -> libraries

* Fix github link in docs

* Clean up grammar and consistency in documentation (mckinsey#4)

* Clean up grammar and consistency in `README` files

* Add esses, mostly

* Reword feature description to not appear automatic

* Update docs/source/05_resources/05_faq.md

Co-Authored-By: Ben Horsburgh <benhorsburgh@outlook.com>

Co-authored-by: Ben Horsburgh <benhorsburgh@outlook.com>

* hotfix/0.4.3: fix broken links

Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>

* Release/0.5.0

* Plotting now backed by pygraphviz. This allows:
   * More powerful layout manager
   * Cleaner fully customisable theme
   * Out-the-box styling for different node and edge types
* Can now get subgraphs from StructureModel containing a specific node
* Bugfix to resolve issue when fitting CPDs with some missing states in data
* Minor documentation fixes and improvements

* Release/0.6.0

* Release/0.7.0 (mckinsey#57)

* Added plottting tutorial to the documentation
* Updated `viz.draw` syntax in tutorial notebooks
* Bugfix on notears lasso (`from_numpy_lasso` and `from_pandas_lasso`) where the non-negativity constraint was not being set
* Added DAG-based synthetic data generator for mixed types (binary, categorical, continuous) using a linear SEM approach.
* Unpinned some requirements

* black

* pin pytorch version

* pin pytorch version

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>
Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>

* Structure learning regressor (mckinsey#68)

* initial commit (local copy-paste)

* fixed minor comments

* minor bugfix

* impute from children inital commit

* bugfixes and method option

* auto thresholding

* autothreshold and bugfix

* make threshold removal explicit

* add l1 argument

* remove child imputation

* feat importance fix and tabu logic

* moved threshold till dag

* restructure with base class

* coef mask

* recipe

* enable bias fitting

* persist bias as node attribute

* allow fit_intercept

* minor PR comment fixes

* minor comment adjustment

* test coverage and l1 clarification

* recipe

* minor test fixes

* more tests

* full test coverage

* revove python 3.5/3.6 unsupported import

* add normalization option

* idiomatic typing

* correct pylint errors

* update some tests

* more typeing updates

* more pylint requirements

* more pylint disable

* python 3.5 support

* try to get to work with 3.5

* full coverage and 3.5 support

* remove base class to pass test

* remove unneeded supression

* black formatting changes

* remove unused import

* pytlint supression

* minor reformat change

* isort fix

* better defensive programming

* fix unittests

* docstring update

* do Raises docstring properly

* action SWE suggestions

* hotfixes

* minor update

* minor black formatting change

* final merge checkbox

* fix end of file

* Data Gen root node initialisation fix (mckinsey#72)

* Hotfix/0.4.3 (mckinsey#7) - Address broken links and grammar

* Fix documentation links in README (mckinsey#2)

* Fix links in README

* library -> libraries

* Fix github link in docs

* Clean up grammar and consistency in documentation (mckinsey#4)

* Clean up grammar and consistency in `README` files

* Add esses, mostly

* Reword feature description to not appear automatic

* Update docs/source/05_resources/05_faq.md

Co-Authored-By: Ben Horsburgh <benhorsburgh@outlook.com>

Co-authored-by: Ben Horsburgh <benhorsburgh@outlook.com>

* hotfix/0.4.3: fix broken links

Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>

* Release/0.5.0

* Plotting now backed by pygraphviz. This allows:
   * More powerful layout manager
   * Cleaner fully customisable theme
   * Out-the-box styling for different node and edge types
* Can now get subgraphs from StructureModel containing a specific node
* Bugfix to resolve issue when fitting CPDs with some missing states in data
* Minor documentation fixes and improvements

* Release/0.6.0

* Release/0.7.0 (mckinsey#57)

* Added plottting tutorial to the documentation
* Updated `viz.draw` syntax in tutorial notebooks
* Bugfix on notears lasso (`from_numpy_lasso` and `from_pandas_lasso`) where the non-negativity constraint was not being set
* Added DAG-based synthetic data generator for mixed types (binary, categorical, continuous) using a linear SEM approach.
* Unpinned some requirements

* fix for consinuous normal data

* generalise across all dtypes

* support fit_intercept

* fixed many test errors

* test logic fixes

* lint test fixes

* python 3.5 failure change

* minor test bugfix

* black

* pin pytorch version

* pin pytorch version

* additional test parameter

* black formatting

* requested changes

* test updates and docstring

* black format change

* disable too many lines

* change

* move recipe to tutorial folder

* releaseMD changes

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>
Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>
Co-authored-by: Philip Pilgerstorfer <34248114+qbphilip@users.noreply.github.com>
Co-authored-by: qbphilip <philip.pilgerstorfer@quantumblack.com>

* [1/2] Poisson data for data gen (mckinsey#61)

* Hotfix/0.4.3 (mckinsey#7) - Address broken links and grammar

* Fix documentation links in README (mckinsey#2)

* Fix links in README

* library -> libraries

* Fix github link in docs

* Clean up grammar and consistency in documentation (mckinsey#4)

* Clean up grammar and consistency in `README` files

* Add esses, mostly

* Reword feature description to not appear automatic

* Update docs/source/05_resources/05_faq.md

Co-Authored-By: Ben Horsburgh <benhorsburgh@outlook.com>

Co-authored-by: Ben Horsburgh <benhorsburgh@outlook.com>

* hotfix/0.4.3: fix broken links

Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>

* Release/0.5.0

* Plotting now backed by pygraphviz. This allows:
   * More powerful layout manager
   * Cleaner fully customisable theme
   * Out-the-box styling for different node and edge types
* Can now get subgraphs from StructureModel containing a specific node
* Bugfix to resolve issue when fitting CPDs with some missing states in data
* Minor documentation fixes and improvements

* Release/0.6.0

* Release/0.7.0 (mckinsey#57)

* Added plottting tutorial to the documentation
* Updated `viz.draw` syntax in tutorial notebooks
* Bugfix on notears lasso (`from_numpy_lasso` and `from_pandas_lasso`) where the non-negativity constraint was not being set
* Added DAG-based synthetic data generator for mixed types (binary, categorical, continuous) using a linear SEM approach.
* Unpinned some requirements

* refactor & docstring

* remove unused helper object

* add data gen to init

* make test more robust

* add count data and test, use logs for poisson samples for stability

* fix tests

* duplicate fixtures

* remove unused fixtures

* refactor data_generators into package with core and wrappers

* move wrapper to test_wrapper

* variable name change bugfix

* fix tests

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>
Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>
Co-authored-by: angeldrothqb <angel.droth@quantumblack.com>

* [2/2] Nonlinear Data gen (mckinsey#60)

* Hotfix/0.4.3 (mckinsey#7) - Address broken links and grammar

* Fix documentation links in README (mckinsey#2)

* Fix links in README

* library -> libraries

* Fix github link in docs

* Clean up grammar and consistency in documentation (mckinsey#4)

* Clean up grammar and consistency in `README` files

* Add esses, mostly

* Reword feature description to not appear automatic

* Update docs/source/05_resources/05_faq.md

Co-Authored-By: Ben Horsburgh <benhorsburgh@outlook.com>

Co-authored-by: Ben Horsburgh <benhorsburgh@outlook.com>

* hotfix/0.4.3: fix broken links

Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>

* Release/0.5.0

* Plotting now backed by pygraphviz. This allows:
   * More powerful layout manager
   * Cleaner fully customisable theme
   * Out-the-box styling for different node and edge types
* Can now get subgraphs from StructureModel containing a specific node
* Bugfix to resolve issue when fitting CPDs with some missing states in data
* Minor documentation fixes and improvements

* Release/0.6.0

* Release/0.7.0 (mckinsey#57)

* Added plottting tutorial to the documentation
* Updated `viz.draw` syntax in tutorial notebooks
* Bugfix on notears lasso (`from_numpy_lasso` and `from_pandas_lasso`) where the non-negativity constraint was not being set
* Added DAG-based synthetic data generator for mixed types (binary, categorical, continuous) using a linear SEM approach.
* Unpinned some requirements

* refactor & docstring

* remove unused helper object

* add data gen to init

* make test more robust

* add count data and test, use logs for poisson samples for stability

* add nonlinear

* fix tests

* duplicate fixtures

* remove unused fixtures

* refactor data_generators into package with core and wrappers

* move wrapper to test_wrapper

* add nonlinear to init

* change order in all

* change release.md

* root node fix on core + count

* nonlinear support to wrappers

* docstring update

* bugfix and reproducability fix

* many tests and test updates

* poiss bugfix and test fix

* moar test coverage

* categorical dataframe test coverage

* full test coverage and linting

* fix linting and fstring

* black reformat

* fix unused pylint argument

* pytest fix

* FINAL linting fix

* Fix stuff (mckinsey#75)

CircleCI fixes

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>
Co-authored-by: Zain Patel <30357972+mzjp2@users.noreply.github.com>
Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>
Co-authored-by: angeldrothqb <angel.droth@quantumblack.com>
Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* update black version (mckinsey#76)

* fix black

* Fix/check for NA or Infinity when notears is used  (mckinsey#54)

* update scipy version (mckinsey#77)

* add DYNOTEARS implementation (mckinsey#50)

Adds DYNOTEARS and corresponding data generator (for testing)

* Pytorch NOTEARS extension - Non-Linear/Hidden Layer (mckinsey#65)

* NoTears as ScoreSolver

* refactor continuous solver

* adding attribute to access weight matrix

* refactoring continuous solver

* Adding fit_lasso method

* add data_gen_continuous.py and tests (mckinsey#38)

* add data_gen.py

* rename

* wrap SM

* move data_gen_continous, create test

* more coverage

* test fixes

* move discrete sem to another file

* node list dupe check test

* ValueError tests

* replace dag and sem functions with Ben's verions

* add Ben's tests

* fix fstring

* to_numpy_array coverage

* Ben's comments

* remove unreachable ValueError for coverage

* remove unused fixture

* remove redundant test

* remove extensions

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* docstring

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* docstring

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* docs

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* doc

Co-Authored-By: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* rename file, g_dag rename to sm

* add new tests for equal weights

* docstring

* steve docstring, leq fix

* steve comments + docstrings

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>

* Adding check input and removing some inner functions

* Removing attribute original_ndarray

* Aligning from pandas with new implementation

* Adding tests for fit_lasso

* More tests for lasso

* wrapping tabu params in a dict

* Aligning tests with new tabu params

* Aligning from_pandas with new tabu_params

* Adding fit_intercept option to _fit method

* Adding scaling option

* fixing lasso tests

* Adding a test for fit_intercept

* scaling option only with mean

* Correction in lasso bounds

* Fix typos

* Remove duplicated bounds function

* adding comments

* add torch files from xunzheng

* add from_numpy_torch function that works like from_numpy_lasso

* lint

* add requirements

* add debug functionality

* add visual debug test

* add license

* allow running as main for viz, comments

* move to contrib

* make multi layer work a bit better

* add comment for multi layer

* use polynomial dag constraint for better speed comparison

* revert unnecessary changes to keep PR lean

* revert unnecessary changes to keep PR lean

* revert unnecessary changes to keep PR lean

* fixes

* refactor

* Integrated tests

* Checkpoint

* Refactoring

* Finished initial refactoring

* All tests passed

* Cleaning

* Git add testing

* Get adjacency matrix

* Done cleaning

* Revert change to original notears

* Revert change to original structuremodel

* Revert change to pylintrc

* Undo deletion

* Apply suggestions from Zain

Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* Addressed Zain comments

* Migrated from_numpy

* Delete contrib test

* Migrated w_threshold

* Some linting

* Change to None

* Undo deletion

* List comprehension

* Refactoring scipy and remove scipy optimiser

* Refactoring

* Refactoring

* Refactoring complete

* change from np to torch tensor

* More refactoring

* Remove hnew equal to None

* Refactor again and remove commented line

* Minor change

* change to params

* Addressing Philip's comment

* Add property

* Add fc2 property weights

* Change to weights

* Docstring

* Linting

* Linting completed

* Add gpu code

* Add gpu to from_numpy and from_pandas

* cuda 0 run out of memory

* Debugging

* put 5

* debugging gpu

* shift to inner loop

* debugging not in place

* Use cada instead of to

* Support both interfaces

* Benchmarking gpu

* Minor fix

* correct import path for test

* change gpu from 5 to 1

* Debugging

* Debugging

* Experimenting

* Linting

* Remove hidden layer and gpu

* Linting

* Testing and linting

* Correct pytorch to torch

* Add init zeros

* Change weight threshold to 0.25

* Revert requirements.txt

* Add hidden layer

* small refactor

* directional adj

* minor edits

* fix bias issues

* breaking changes update to the interface

* typo

* new regressor regularisation interface

* update forward method

* forward(X) predictions work

* working!

* bugfix data normalisation

* some fixes

* average regularisation and adj calc at end

* give credit!

Co-authored-by: Philip Pilgerstorfer <34248114+qbphilip@users.noreply.github.com>

* loc lin docstring update

Co-authored-by: Philip Pilgerstorfer <34248114+qbphilip@users.noreply.github.com>

* docstring + fc1/fc2 name updates

* moar docstring updates

* more minor updates

* remove normalize option

* plotting util

* rename to DAGRegressor

* rename and checks

* more util functions

* fix bias

* fix bias with no intercept

* fix linear adj

* add tests

* minor fix

* minor fixes

* extend interface to bias

* differentialte coef_ and feature_imporances

* seperate bias element

* tests

* more test coverage

* nonlinear test coverage

* test hotfix

* more test coverage

* test requirements update

* more test coverage

* formatting changes

* final pylint change

* more linting

* more bestpractice structuring

* more minor fixes

* FINAL linting updates

* actual last change

* update to reg defaults, additions to the tutorial

* nonlinear regularisation updates

* regressor tutorial

* almost finishing touches

* gradient based h function!

* soft clamp and coef feature importance seperation

* small api update, closer to batchnorm

* docstring updates

* stronger soft clamping

* gradient L1 rather than L2

* fcpos neg removal, gradient optim

* revert back to create_graph=True for 2nd derivative

* remove print and test fix

* black reformatting

* new black version

* full test coverage

* isort fix

* pylint fix

* first layer h(W) for speed optimization

* fix batch norm system

* add nonlinear test

* test hotfix

* black reformat

* isort fix

* remove X requirement from h_func

* regressor tutorial final commit and black update

* LayerNorm replacement

Co-authored-by: Philip Pilgerstorfer <34248114+qbphilip@users.noreply.github.com>

* major changes

* add standardization

* minort changes

* fix tests

* rename reg parameters

* linting

* test coverage, docstting

* check array for infs

* fix isinstance to base type

* fix isort, add test coverage

* new tutorial

* docstring fix

Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* test string match

Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* assert improvement

Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* SWE suggestions

* minor bugfix

* more test fixing

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>
Co-authored-by: LiseDiagneQB <60981366+LiseDiagneQB@users.noreply.github.com>
Co-authored-by: Casey Juanxi Li <50737712+caseyliqb@users.noreply.github.com>
Co-authored-by: qbphilip <philip.pilgerstorfer@quantumblack.com>
Co-authored-by: Zain Patel <zain.patel@quantumblack.com>
Co-authored-by: angeldrothqb <angel.droth@quantumblack.com>
Co-authored-by: angeldrothqb <67913551+angeldrothqb@users.noreply.github.com>
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* release.md, version bump, docs

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* release.MD

* version bump

* Update causalnex/structure/pytorch/dist_type/_base.py

Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

* Update causalnex/structure/pytorch/dist_type/__init__.py

Co-authored-by: Zain Patel <zain.patel@quantumblack.com>

Co-authored-by: Ben Horsburgh <Ben.Horsburgh@quantumblack.com>
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Co-authored-by: Nikos Tsaousis <tsanikgr@users.noreply.github.com>
Co-authored-by: Deepyaman Datta <deepyaman.datta@utexas.edu>
Co-authored-by: Philip Pilgerstorfer <34248114+qbphilip@users.noreply.github.com>
Co-authored-by: GabrielAzevedoFerreiraQB <57528979+GabrielAzevedoFerreiraQB@users.noreply.github.com>
Co-authored-by: stevelersl <55385183+SteveLerQB@users.noreply.github.com>
Co-authored-by: LiseDiagneQB <60981366+LiseDiagneQB@users.noreply.github.com>
Co-authored-by: Casey Juanxi Li <50737712+caseyliqb@users.noreply.github.com>
Co-authored-by: qbphilip <philip.pilgerstorfer@quantumblack.com>
Co-authored-by: Zain Patel <zain.patel@quantumblack.com>
Co-authored-by: KING-SID <sidhantbendre22@gmail.com>
Co-authored-by: Jebq <jb.oger2312@gmail.com>
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7 changes: 7 additions & 0 deletions RELEASE.md
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# Upcoming release

# Release 0.8.1

* Added `DAGClassifier` sklearn interface using the Pytorch NOTEARS implementation. Supports binary classification.
* Added binary distributed data support for pytorch NOTEARS.
* Added a "distribution type" schema system for pytorch NOTEARS (`pytorch.dist_type`).
* Rename "data type" to "distribution type" in internal language.
* Fixed uniform discretiser (`Discretiser(method='uniform')`) where all bins have identical widths.
* Fixed and updated sklearn tutorial in docs.

# Release 0.8.0

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2 changes: 1 addition & 1 deletion causalnex/__init__.py
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causalnex toolkit for causal reasoning (Bayesian Networks / Inference)
"""

__version__ = "0.8.0"
__version__ = "0.8.1"

__all__ = ["structure", "discretiser", "evaluation", "inference", "network", "plots"]
2 changes: 1 addition & 1 deletion causalnex/structure/pytorch/dist_type/__init__.py
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# limitations under the License.

"""
``causalnex.pytorch.data_type`` provides distribution type support classes for the pytorch NOTEARS algorithm.
``causalnex.pytorch.dist_type`` provides distribution type support classes for the pytorch NOTEARS algorithm.
"""

from .binary import DistTypeBinary
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2 changes: 1 addition & 1 deletion causalnex/structure/pytorch/dist_type/_base.py
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# limitations under the License.

"""
``causalnex.pytorch.data_type._base`` defines the distribution type class interface and default behavior.
``causalnex.pytorch.dist_type._base`` defines the distribution type class interface and default behavior.
"""

from abc import ABCMeta, abstractmethod
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