Extend the main Makefile to compile utrrnaseq and copy the binary to Augustus/bin #14
Comments
gentoo-bot
pushed a commit
to gentoo/sci
that referenced
this issue
Mar 29, 2019
Do not require static libraries. Only bamtools are really needed. htslib is not needed. For bam2wig samtools-0.2 series is needed. I decided to blindly install some of the binaries created but not copied into `./bin/`. `src/Makefile` will gladly define mysql and sqlite together, probably a non-sense. We force mysql as we check for it first. Not sure if sqlite should be preferred. I documented in the augustus-3.3.2.ebuild other "forgotten" files, like gbrowse.conf and a template for gff2ps. I dropped `-O3` but left in `-ggdb` in the `CXXFLAGS`. Gaius-Augustus/Augustus#14 Gaius-Augustus/Augustus#50 Gaius-Augustus/Augustus#51 Gaius-Augustus/Augustus#52 Gaius-Augustus/Augustus#53 Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
The Makefile in Augustus needs an update. It currently does not produce a binary for utrrnaseq in Augustus/bin . Sources for utrrnaseq reside in Augustus/auxprogs/utrrnaseq.
The text was updated successfully, but these errors were encountered: