Fix Wiggle tracks

• Wiggle tracks now end up in hints group
• description.html page has correct name (was previously aboutHub.html)

MakeHub for BRAKER3

• command line option --cores was changed to --threads
• MakeHub was adapted to BRAKER3 evidence
• input of gtf files from NCBI is no possible

MakeHub 1.0.6

• conversion of mpileup to wig is debugged

MakeHub 1.0.5

• adaptation to current GeMoMa GFF3 format

• compatibility with ENSEMBL GTF format

MakeHub 1.0.4

• documented example files in README.md/userguide.pdf

• updated userguide.pdf generation (Makefile)

• fixed various typos

• added information on steps to take prior adding hub to list of public hubs

• fixed HTML track description page generation

MakeHub 1.0.3

• new option to add SNAP gene prediction track from native SNAP GFF3 format (instead of MAKER-SNAP)
• new option to add GlimmerHMM gene prediction track
• new cytoBand track
• implementation of genePredToBigGenePred (replaces genePredToBed when possible)

MakeHub 1.0.2

Buxfixes in layout of browser caption display, bugfixed writing HTML description page of reference annotation track, updated README.pdf and README.md to contain reference.

MakeHub 1.0.1

Minor improvements:

• Speed up of bam/wig track generation if --display-bam-as-bam is set by sorting the BAM file only once
• improved documentation by adding an illustration

MakeHub 1.0

First release of MakeHub, the software for fully automatic generation of UCSC assembly hubs with output of BRAKER, MAKER and Gemoma.