BioGenEL

This repository is for our NAACL 2022 work:

Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning

Citation

If interested, please cite:

@misc{
  BioGenEL,
  doi = {10.48550/ARXIV.2204.05164},
  url = {https://arxiv.org/abs/2204.05164},
  author = {Yuan, Hongyi and Yuan, Zheng and Yu, Sheng},
  title = {Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning},
  publisher = {arXiv},
  year = {2022}
}

Some of our code are modified from facebook's GENRE work.