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GavinHaLab

Cancer Genomics and Computational Biology Lab at Fred Hutch

18 followers
FRED HUTCHINSON CANCER RESEARCH CENTER
https://gavinhalab.org
@gavinha

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ichorCNA ichorCNA Public

Forked from broadinstitute/ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

R 11 9
Griffin Griffin Public

Forked from adoebley/Griffin

A flexible framework for nucleosome profiling of cell-free DNA

Python 6 4
TitanCNA_SV_WGS TitanCNA_SV_WGS Public

R 1 1

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11 results for all repositories written in R sorted by last updated

Showing 10 of 11 repositories

TitanCNA_SV_WGS Public

R 1 MIT 1 0 1 Updated May 29, 2024
CDK12-CRPC-paper Public

R 0 BSD-3-Clause-Clear 0 0 0 Updated May 28, 2024
ichorCNA Public Forked from broadinstitute/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

R 11 GPL-3.0 85 11 1 Updated May 24, 2024
gridss2_somatic_sv_call Public

R 0 0 0 1 Updated Jun 21, 2023
crpc-sv-pattern-study Public

R 2 3 0 0 Updated Jul 21, 2022
ichorCNA_SV_WGS_tumorOnly Public

R 3 1 0 0 Updated Jan 10, 2022
SV_WGS_analysis Public
Structural variation analysis pipeline for cancer genomes

R 5 MIT 1 1 0 Updated Jan 10, 2022
SV_10X_analysis Public
Structural variation analysis of 10X Genomics linked-read data

R 5 MIT 4 0 0 Updated Jan 10, 2022
TitanCNA_SV_WGS_tumorOnly Public

R 0 MIT 0 0 0 Updated Apr 23, 2021
ichorCNA_offtarget Public
Estimating tumor fraction by exploiting the off-target reads from targeted DNA sequencing.

R 5 MIT 4 0 0 Updated Feb 16, 2021

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