pre-release updated to version number, sphinx paths, copyright dates

astrodata/_version.py

@@ -7,7 +7,7 @@
 # --- Setup Version Here ---
 API = 3
 FEATURE = 0
-BUG = 1
+BUG = 2
 TAG = ''
 
 

astrodata/doc/ad_CheatSheet/conf.py

@@ -50,7 +50,7 @@
 
 # General information about the project.
 project = 'Astrodata Cheat Sheet'
-copyright = '2021, Association of Universities for Research in Astronomy'
+copyright = '2022, Association of Universities for Research in Astronomy'
 
 # Note that AURA owns the Copyright, not you.
 
@@ -61,10 +61,10 @@
 # The short X.Y version.
 version = '3.0'
 # The full version, including alpha/beta/rc tags.
-release = '3.0.x'
-rtdurl = 'release-'+release
-#release = '3.0.1'
-#rtdurl = 'v'+release
+#release = '3.0.x'
+#rtdurl = 'release-'+release
+release = '3.0.2'
+rtdurl = 'v'+release
 
 
 # The language for content autogenerated by Sphinx. Refer to documentation
@@ -73,7 +73,7 @@
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:
-today = 'December 2021'
+today = 'July 2022'
 # Else, today_fmt is used as the format for a strftime call.
 #today_fmt = '%B %d, %Y'
 
@@ -265,10 +265,10 @@
 # Example configuration for intersphinx: refer to the Python standard library.
 # Example configuration for intersphinx: refer to the Python standard library.
 intersphinx_mapping = {
-    'astrodata': ('https://astrodata-user-manual.readthedocs.io/en/release-3.0.x/', None),
+    'astrodata': ('https://astrodata-user-manual.readthedocs.io/en/v3.0.2/', None),
     'astropy': ('https://docs.astropy.org/en/stable/', None),
-    'gemini_instruments': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/release-3.0.x/', None),
-    'geminidr': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/release-3.0.x/', None),
+    'gemini_instruments': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/v3.0.2/', None),
+    'geminidr': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/v3.0.2/', None),
     'matplotlib': ('https://matplotlib.org/', None),
     'numpy': ('https://numpy.org/doc/stable/', None),
     'python': ('https://docs.python.org/3/', None),

astrodata/doc/ad_ProgManual/conf.py

@@ -63,7 +63,7 @@
 
 # General information about the project.
 project = 'Astrodata Programmer Manual'
-copyright = '2021, Association of Universities for Research in Astronomy'
+copyright = '2022, Association of Universities for Research in Astronomy'
 author = 'Ricardo Cardenes'
 
 # The version info for the project you're documenting, acts as replacement for
@@ -73,10 +73,10 @@
 # The short X.Y version.
 version = '3.0'
 # The ull version, including alpha/beta/rc tags.
-release = '3.0.x'
-rtdurl = 'release-'+release
-#release = '3.0.1'
-#rtdurl = 'v'+release
+#release = '3.0.x'
+#rtdurl = 'release-'+release
+release = '3.0.2'
+rtdurl = 'v'+release
 
 
 # The language for content autogenerated by Sphinx. Refer to documentation
@@ -89,7 +89,7 @@
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:
 #
-today = 'December 2021'
+today = 'July 2022'
 #
 # Else, today_fmt is used as the format for a strftime call.
 #

astrodata/doc/ad_UserManual/conf.py

@@ -62,7 +62,7 @@
 
 # General information about the project.
 project = 'Astrodata User Manual'
-copyright = '2021, Association of Universities for Research in Astronomy'
+copyright = '2022, Association of Universities for Research in Astronomy'
 # Note that AURA owns the Copyright, not you.
 
 # The version info for the project you're documenting, acts as replacement for
@@ -72,18 +72,18 @@
 # The short X.Y version.
 version = '3.0'
 # The full version, including alpha/beta/rc tags.
-release = '3.0.x'
-rtdurl = 'release-'+release
-#release = '3.0.1'
-#rtdurl = 'v'+release
+#release = '3.0.x'
+#rtdurl = 'release-'+release
+release = '3.0.2'
+rtdurl = 'v'+release
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
 #language = None
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:
-today = 'December 2021'
+today = 'July 2022'
 # Else, today_fmt is used as the format for a strftime call.
 #today_fmt = '%B %d, %Y'
 
@@ -280,8 +280,8 @@
 # Example configuration for intersphinx: refer to the Python standard library.
 intersphinx_mapping = {
     'astropy': ('http://docs.astropy.org/en/stable/', None),
-    'gemini_instruments': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/release-3.0.x/', None),
-    'geminidr': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/release-3.0.x/', None),
+    'gemini_instruments': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/v3.0.2/', None),
+    'geminidr': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/v3.0.2/', None),
     'numpy': ('http://docs.scipy.org/doc/numpy/', None),
     'python': ('https://docs.python.org/3', None),
 }

doc/DRAGONS/changes.rst

@@ -17,18 +17,33 @@ Bug Fixes
 * Continue without crashing when ``traceApertures`` cannot identify a
   starting location for a trace.
 
-* Fix bug where manually-assigned sky frames in ``separateSky`` were added
-  to the list of science frames by mistake.
+* Fix issues with assignment of on-source/sky frames when the user specifies
+  specific frames.
 
 * Fix bug where ``stackFrames`` crashed if using the ``statsec`` parameter
   when scaling or zero-offsetting.
 
 * In fringeCorrect, ``do_cal=force`` has been reactivated.
 
+* Better handling of infinites and NaN in the flat normalization.
+
+**geminidr.gmos**
+
+* Added new primitive to the recipes to mask amplifier 5 in GMOS-S data
+  obtained since January 28, 2022.  GMOS-S amplifier 5 suffered a major
+  failure and it is not usable.
+
+* Ensure that the masks are used when calculating the statistics in
+  scaleByIntensity.
+
 **geminidr.gnirs**
 
 * Added missing support for YPHOT filter.
 
+**geminidr.f2***
+
+* Support of the Flamingos 2 filters.
+
 New Features
 ------------
 
@@ -37,6 +52,9 @@ New Features
 * Add ``wave_units`` and ``data_units`` parameters to ``write1DSpectra`` to
   configure the output
 
+* Under-the-hood modification to distinguish data reduced in quicklook mode
+  versus science mode.
+
 Interface Modifications
 -----------------------
 * Internal Gemini catalog server URL updated.

doc/DRAGONS/conf.py

@@ -50,7 +50,7 @@
 
 # General information about the project.
 project = 'DRAGONS'
-copyright = '2021, Association of Universities for Research in Astronomy'
+copyright = '2022, Association of Universities for Research in Astronomy'
 
 # Note that AURA owns the Copyright, not you.
 
@@ -61,10 +61,10 @@
 # The short X.Y version.
 version = '3.0'
 # The full version, including alpha/beta/rc tags.
-release = '3.0.x'
-rtdurl = 'release-'+release
-#release = '3.0.1'
-#rtdurl = 'v'+release
+#release = '3.0.x'
+#rtdurl = 'release-'+release
+release = '3.0.2'
+rtdurl = 'v'+release
 
 
 # The language for content autogenerated by Sphinx. Refer to documentation
@@ -73,7 +73,7 @@
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:
-today = 'December 2021'
+today = 'July 2022'
 # Else, today_fmt is used as the format for a strftime call.
 #today_fmt = '%B %d, %Y'
 

doc/DRAGONS/releasenotes.rst

@@ -6,6 +6,16 @@
 Release Notes
 *************
 
+V3.0.2
+======
+
+This patch release improves the reduction of GMOS-S data obtained since the
+event on January 28, 2022 that led to the failure of amplifier 5.  This patch
+also adds support of the new Flamingos 2 filters and the filter wheel
+reshuffling that occurred earlier this year.  Various other fixes and features
+are also contained in this patch.  See the :ref:`change logs <changes>` for
+details.
+
 V3.0.1
 ======
 

geminidr/doc/tutorials/F2Img-DRTutorial/DRAGONSlinks.txt

@@ -1,35 +1,35 @@
 .. |caldb| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/caldb.html" target="_blank">caldb</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/caldb.html" target="_blank">caldb</a>
 
 .. |dataselect| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#dataselect" target="_blank">dataselect</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#dataselect" target="_blank">dataselect</a>
 
 .. |descriptors| raw:: html
 
-    <a href="https://astrodata-user-manual.readthedocs.io/en/release-3.0.x/appendices/appendix_descriptors.html" target="_blank">descriptors</a>
+    <a href="https://astrodata-user-manual.readthedocs.io/en/v3.0.2/appendices/appendix_descriptors.html" target="_blank">descriptors</a>
 
 .. |reduce| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/reduce.html" target="_blank">reduce</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/reduce.html" target="_blank">reduce</a>
 
 .. |showd| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#showd" target="_blank">showd</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#showd" target="_blank">showd</a>
 
 .. |showrecipes| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#showrecipes" target="_blank">showrecipes</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#showrecipes" target="_blank">showrecipes</a>
 
 .. |showpars| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#showpars" target="_blank">showpars</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#showpars" target="_blank">showpars</a>
 
 .. |typewalk| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#typewalk" target="_blank">typewalk</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#typewalk" target="_blank">typewalk</a>
 
 .. |atfile| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/reduce.html#the-file-facility" target="_blank">"at-file" Facility</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/reduce.html#the-file-facility" target="_blank">"at-file" Facility</a>

geminidr/doc/tutorials/F2Img-DRTutorial/conf.py

@@ -31,18 +31,18 @@
 # -- Project information -----------------------------------------------------
 
 project = 'DRAGONS Tutorial - Flamingos-2 Data Reduction'
-copyright = '2021, Association of Universities for Research in Astronomy'
+copyright = '2022, Association of Universities for Research in Astronomy'
 author = 'Bruno C. Quint'
 
 # The short X.Y version
 #version = astrodata.version(short=True)
 version = '3.0'
 # The full version, including alpha/beta/rc tags
 #release = astrodata.version()
-release = '3.0.x'
-rtdurl = 'release-'+release
-#release = '3.0.1'
-#rtdurl = 'v'+release
+#release = '3.0.x'
+#rtdurl = 'release-'+release
+release = '3.0.2'
+rtdurl = 'v'+release
 
 
 # -- General configuration ---------------------------------------------------
@@ -86,7 +86,7 @@
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:
-today = 'December 2021'
+today = 'July 2022'
 # Else, today_fmt is used as the format for a strftime call.
 #today_fmt = '%B %d, %Y'
 
@@ -214,10 +214,10 @@
 
 # Example configuration for intersphinx: refer to the Python standard library.
 intersphinx_mapping = {
-    'astrodata': ('https://astrodata-user-manual.readthedocs.io/en/release-3.0.x/', None),
+    'astrodata': ('https://astrodata-user-manual.readthedocs.io/en/v3.0.2/', None),
     'astropy': ('http://docs.astropy.org/en/stable/', None),
-    'gemini_instruments': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/release-3.0.x/', None),
-    'geminidr': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/release-3.0.x/', None),
+    'gemini_instruments': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/v3.0.2/', None),
+    'geminidr': ('https://dragons-recipe-system-programmers-manual.readthedocs.io/en/v3.0.2/', None),
     'matplotlib': ('https://matplotlib.org/', None),
     'numpy': ('https://docs.scipy.org/doc/numpy/', None),
     'python': ('https://docs.python.org/3', None),

geminidr/doc/tutorials/F2Img-DRTutorial/index.rst

@@ -11,7 +11,7 @@ This is a brief tutorial on how to reduce Flamingos-2 images using DRAGONS (Data
 Reduction for Astronomy from Gemini Observatory North and South). It is based on
 information found in the `GEMINI Flamingos-2
 WebPage <https://www.gemini.edu/sciops/instruments/flamingos2/>`_ and in the
-`DRAGONS Documentation on Read The Docs <https://dragons.readthedocs.io/en/latest/>`_.
+`DRAGONS Documentation on Read The Docs <https://dragons.readthedocs.io/en/v3.0.2/>`_.
 
 
 .. toctree::

geminidr/doc/tutorials/GMOSImg-DRTutorial/03_api_reduction.rst

@@ -127,7 +127,7 @@ configured as follow:
 
 The calibration service is now ready to use. If you need more details,
 check the
-`Using the caldb API in the Recipe System User's Manual <https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/caldb.html#using-the-caldb-api>`_ .
+`Using the caldb API in the Recipe System User's Manual <https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/caldb.html#using-the-caldb-api>`_ .
 
 .. _api_create_file_lists:
 

geminidr/doc/tutorials/GMOSImg-DRTutorial/DRAGONSlinks.txt

@@ -1,35 +1,35 @@
 .. |caldb| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/caldb.html" target="_blank">caldb</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/caldb.html" target="_blank">caldb</a>
 
 .. |dataselect| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#dataselect" target="_blank">dataselect</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#dataselect" target="_blank">dataselect</a>
 
 .. |descriptors| raw:: html
 
-    <a href="https://astrodata-user-manual.readthedocs.io/en/release-3.0.x/appendices/appendix_descriptors.html" target="_blank">descriptors</a>
+    <a href="https://astrodata-user-manual.readthedocs.io/en/v3.0.2/appendices/appendix_descriptors.html" target="_blank">descriptors</a>
 
 .. |reduce| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/reduce.html" target="_blank">reduce</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/reduce.html" target="_blank">reduce</a>
 
 .. |showd| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#showd" target="_blank">showd</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#showd" target="_blank">showd</a>
 
 .. |showrecipes| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#showrecipes" target="_blank">showrecipes</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#showrecipes" target="_blank">showrecipes</a>
 
 .. |showpars| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#showpars" target="_blank">showpars</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#showpars" target="_blank">showpars</a>
 
 .. |typewalk| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/supptools.html#typewalk" target="_blank">typewalk</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/supptools.html#typewalk" target="_blank">typewalk</a>
 
 .. |atfile| raw:: html
 
-    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/release-3.0.x/reduce.html#the-file-facility" target="_blank">"at-file" Facility</a>
+    <a href="https://dragons-recipe-system-users-manual.readthedocs.io/en/v3.0.2/reduce.html#the-file-facility" target="_blank">"at-file" Facility</a>