adding QA recipe libraries for GNIRS and F2

geminidr/f2/recipes/qa/recipes_LS_SPECT.py

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+"""
+Recipes available to data with tags ['F2', 'SPECT', LS'].
+Default is "reduceScience".
+"""
+recipe_tags = {'F2', 'SPECT', 'LS'}
+
+def reduceScience(p):
+    """
+    To be updated as development continues: This recipe processes F2 longslit 
+    spectroscopic data, currently up to basic extraction (no telluric correction).
+
+    Parameters
+    ----------
+    p : :class:`geminidr.f2.primitives_f2_longslit.F2Longslit`
+
+    """
+    p.prepare()
+    p.addDQ()
+    p.nonlinearityCorrect() # non-linearity correction tbd even for gemini iraf
+    p.ADUToElectrons()
+    p.addVAR(poisson_noise=True, read_noise=True)
+    p.darkCorrect()
+    p.flatCorrect()
+    p.attachWavelengthSolution()
+    p.addToList(purpose='forSky')
+    p.getList(purpose='forSky')
+    p.separateSky()
+    p.associateSky()
+    p.skyCorrect()
+    p.distortionCorrect()
+    p.findApertures()
+    p.measureIQ(display=True)
+
+    # side stream to generate 1D spectra from individual frame, pre-stack
+    p.traceApertures(outstream='prestack')
+    p.extractSpectra(stream='prestack')
+    p.plotSpectraForQA(stream='prestack')
+    # The GUI polls for new data every 3 seconds.  The next steps can be
+    # quicker than that leading to the second plotSpectra to hijack this one.
+    # Hijacking issues were highlighted in integration tests.
+    sleep(3)
+
+    # continuing with the main stream of 2D pre-stack
+    p.adjustWCSToReference()
+    p.resampleToCommonFrame()
+    p.stackFrames()
+    p.findApertures()
+    p.measureIQ(display=True)
+    p.traceApertures()
+    p.extractSpectra()
+    p.plotspectraForQA()
+
+
+_default = reduceScience

geminidr/gnirs/recipes/qa/recipes_LS_SPECT.py

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+"""
+Recipes available to data with tags ['GNIRS', 'SPECT', LS'].
+Default is "reduceScience".
+"""
+recipe_tags = {'GNIRS', 'SPECT', 'LS'}
+
+def reduceScience(p):
+    """
+    To be updated as development continues: This recipe processes GNIRS longslit 
+    spectroscopic data, currently up to basic spectral extraction without telluric correction.
+
+    Parameters
+    ----------
+    p : :class:`geminidr.gnirs.primitives_gnirs_longslit.GNIRSLongslit`
+
+    """
+    p.prepare()
+    p.addDQ()
+    # p.nonlinearityCorrect() # non-linearity correction tbd 
+    p.ADUToElectrons()
+    p.addVAR(poisson_noise=True, read_noise=True)
+    p.flatCorrect()
+    p.attachWavelengthSolution()
+    p.addToList(purpose='forSky')
+    p.getList(purpose='forSky')
+    p.separateSky()
+    p.associateSky()
+    p.skyCorrect()
+    p.distortionCorrect()
+    p.findApertures()
+    p.measureIQ(display=True)
+
+    # side stream to generate 1D spectra from individual frame, pre-stack
+    p.traceApertures(outstream='prestack')
+    p.extractSpectra(stream='prestack')
+    p.plotSpectraForQA(stream='prestack')
+    # The GUI polls for new data every 3 seconds.  The next steps can be
+    # quicker than that leading to the second plotSpectra to hijack this one.
+    # Hijacking issues were highlighted in integration tests.
+    sleep(3)
+
+    # continuing with the main stream of 2D pre-stack
+    p.adjustWCSToReference()
+    p.resampleToCommonFrame()
+    p.stackFrames()
+    p.findApertures()
+    p.measureIQ(display=True)
+    p.traceApertures()
+    p.extractSpectra()
+    p.plotSpectraForQA()
+
+
+_default = reduceScience