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When I search for FASTA sequences matching the genbankAccession of the details, or vice versa, I am not able to get back the same sample metadata/fasta records. Is there a recommended way to download the fasta and metadata for the same set of random samples from a clade etc?
Thanks,
Matt
The text was updated successfully, but these errors were encountered:
Hi,
Apologies if this is mentioned somewhere in the documentation, but I can't find it.
I am using the LAPIS API to download 1000 representative samples for a NextStrain clade, e.g. with the following:
https://lapis.cov-spectrum.org/open/v1/sample/fasta?orderBy=random&limit=1000&dateFrom=2020-01-06&dateTo=2024-01-23&nextstrainClade=19A&host=Homo+sapiens&downloadAsFile=true
Or
https://lapis.cov-spectrum.org/open/v1/sample/details?orderBy=random&limit=1000&dateFrom=2020-01-06&dateTo=2024-01-23&nextstrainClade=19A&host=Homo+sapiens&downloadAsFile=true&dataFormat=csv
When I search for FASTA sequences matching the genbankAccession of the details, or vice versa, I am not able to get back the same sample metadata/fasta records. Is there a recommended way to download the fasta and metadata for the same set of random samples from a clade etc?
Thanks,
Matt
The text was updated successfully, but these errors were encountered: