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This wiki is about the upcoming LAPIS version 2 and is still in the early phase. It is not yet ready-to-use!

Page Structure:

• Introduction
• Tutorial
  • Enduser
    • Plot the global distribution of all sequences in R
    • Retrieve and plot data in python
    • Build a subsampled phylogenetic tree
    • Tutorial for (Variant queries)
  • Maintainer
    • Start your own LAPIS-SILO instance
    • Support partial dates and year, month, and week fields
• How-to Guides
  • Enduser
    • Fill dataframe
  • Maintainer *
• Explanation
  • Variant query
  • Data version
  • Date handling
  • Mutation filter
  • Ambiguous symbols
  • Pango lineage query
  • System Architecture (LAPIS-SILO)
• Reference
  • Query Format
  • Endpoints
  • Variant query
  • Database config
• Glossary