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feat(components): add mutation comparison with table
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129 changes: 129 additions & 0 deletions
129
components/src/preact-components/display/mutation-comparison-component.stories.ts
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|---|---|---|
| @@ -0,0 +1,129 @@ | ||
| import type { Meta, StoryObj } from '@storybook/web-components'; | ||
| import { html } from 'lit'; | ||
| import './mutation-comparison-component'; | ||
| import '../../components/app'; | ||
| import { LAPIS_URL, NUCLEOTIDE_INSERTIONS_ENDPOINT, NUCLEOTIDE_MUTATIONS_ENDPOINT } from '../../constants'; | ||
| import { MutationComparisonProps } from '../../preact/mutationComparison/mutation-comparison'; | ||
| import nucleotideMutationsSomeVariant from '../../preact/mutationComparison/__mockData__/nucleotideMutationsSomeVariant.json'; | ||
| import nucleotideInsertionsSomeVariant from '../../preact/mutationComparison/__mockData__/nucleotideInsertionsSomeVariant.json'; | ||
| import nucleotideMutationsOtherVariant from '../../preact/mutationComparison/__mockData__/nucleotideMutationsOtherVariant.json'; | ||
| import nucleotideInsertionsOtherVariant from '../../preact/mutationComparison/__mockData__/nucleotideInsertionsOtherVariant.json'; | ||
|
|
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| const meta: Meta<MutationComparisonProps> = { | ||
| title: 'Visualization/Mutation comparison', | ||
| component: 'gs-mutation-comparison-component', | ||
| argTypes: { | ||
| variants: { control: 'object' }, | ||
| sequenceType: { | ||
| options: ['nucleotide', 'amino acid'], | ||
| control: { type: 'radio' }, | ||
| }, | ||
| views: { | ||
| options: ['table', 'grid'], | ||
| control: { type: 'check' }, | ||
| }, | ||
| }, | ||
| }; | ||
|
|
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| export default meta; | ||
|
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| const Template: StoryObj<MutationComparisonProps> = { | ||
| render: (args) => html` | ||
| <div class="w-11/12 h-11/12"> | ||
| <gs-app lapis="${LAPIS_URL}"> | ||
| <gs-mutation-comparison-component | ||
| .variants=${args.variants} | ||
| .sequenceType=${args.sequenceType} | ||
| .views=${args.views} | ||
| ></gs-mutation-comparison-component> | ||
| </gs-app> | ||
| </div> | ||
| `, | ||
| }; | ||
|
|
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| const dateTo = '2022-01-01'; | ||
| const dateFrom = '2021-01-01'; | ||
|
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| export const Default = { | ||
| ...Template, | ||
| args: { | ||
| variants: [ | ||
| { | ||
| displayName: 'Some variant', | ||
| lapisFilter: { country: 'Switzerland', pangoLineage: 'B.1.1.7', dateTo }, | ||
| }, | ||
| { | ||
| displayName: 'Other variant', | ||
| lapisFilter: { | ||
| country: 'Switzerland', | ||
| pangoLineage: 'B.1.1.7', | ||
| dateFrom, | ||
| dateTo, | ||
| }, | ||
| }, | ||
| ], | ||
| sequenceType: 'nucleotide', | ||
| views: ['table'], | ||
| }, | ||
| parameters: { | ||
| fetchMock: { | ||
| mocks: [ | ||
| { | ||
| matcher: { | ||
| name: 'nucleotideMutationsSomeVariant', | ||
| url: NUCLEOTIDE_MUTATIONS_ENDPOINT, | ||
| query: { | ||
| country: 'Switzerland', | ||
| pangoLineage: 'B.1.1.7', | ||
| dateTo, | ||
| minProportion: 0, | ||
| }, | ||
| }, | ||
| response: { | ||
| status: 200, | ||
| body: nucleotideMutationsSomeVariant, | ||
| }, | ||
| }, | ||
| { | ||
| matcher: { | ||
| name: 'nucleotideInsertionsSomeVariant', | ||
| url: NUCLEOTIDE_INSERTIONS_ENDPOINT, | ||
| query: { country: 'Switzerland', pangoLineage: 'B.1.1.7', dateTo }, | ||
| }, | ||
| response: { | ||
| status: 200, | ||
| body: nucleotideInsertionsSomeVariant, | ||
| }, | ||
| }, | ||
| { | ||
| matcher: { | ||
| name: 'nucleotideMutationsOtherVariant', | ||
| url: NUCLEOTIDE_MUTATIONS_ENDPOINT, | ||
| query: { | ||
| country: 'Switzerland', | ||
| pangoLineage: 'B.1.1.7', | ||
| dateFrom, | ||
| dateTo, | ||
| minProportion: 0, | ||
| }, | ||
| }, | ||
| response: { | ||
| status: 200, | ||
| body: nucleotideMutationsOtherVariant, | ||
| }, | ||
| }, | ||
| { | ||
| matcher: { | ||
| name: 'nucleotideInsertionsOtherVariant', | ||
| url: NUCLEOTIDE_INSERTIONS_ENDPOINT, | ||
| query: { country: 'Switzerland', pangoLineage: 'B.1.1.7', dateFrom, dateTo }, | ||
| }, | ||
| response: { | ||
| status: 200, | ||
| body: nucleotideInsertionsOtherVariant, | ||
| }, | ||
| }, | ||
| ], | ||
| }, | ||
| }, | ||
| }; |
30 changes: 30 additions & 0 deletions
30
components/src/preact-components/display/mutation-comparison-component.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,30 @@ | ||
| import { customElement, property } from 'lit/decorators.js'; | ||
| import { SequenceType } from '../../types'; | ||
| import { PreactLitAdapterWithGridJsStyles } from '../PreactLitAdapterWithGridJsStyles'; | ||
| import { | ||
| MutationComparison, | ||
| MutationComparisonVariant, | ||
| View, | ||
| } from '../../preact/mutationComparison/mutation-comparison'; | ||
|
|
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| @customElement('gs-mutation-comparison-component') | ||
| export class MutationComparisonComponent extends PreactLitAdapterWithGridJsStyles { | ||
| @property({ type: Array }) | ||
| variants: MutationComparisonVariant[] = []; | ||
|
|
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| @property({ type: String }) | ||
| sequenceType: SequenceType = 'nucleotide'; | ||
|
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| @property({ type: Array }) | ||
| views: View[] = ['table']; | ||
|
|
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| override render() { | ||
| return <MutationComparison variants={this.variants} sequenceType={this.sequenceType} views={this.views} />; | ||
| } | ||
| } | ||
|
|
||
| declare global { | ||
| interface HTMLElementTagNameMap { | ||
| 'gs-mutation-comparison-component': MutationComparisonComponent; | ||
| } | ||
| } |
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147 changes: 147 additions & 0 deletions
147
components/src/preact/mutationComparison/__mockData__/nucleotideInsertionsOtherVariant.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,147 @@ | ||
| { | ||
| "info": { | ||
| "dataVersion": 1709685650 | ||
| }, | ||
| "data": [ | ||
| { | ||
| "insertion": "ins_21571:TTT", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_26654:T", | ||
| "count": 1 | ||
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| "insertion": "ins_28250:CTG", | ||
| "count": 25 | ||
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| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_27552:TT", | ||
| "count": 28 | ||
| }, | ||
| { | ||
| "insertion": "ins_2170:GAGCCAGGG", | ||
| "count": 3 | ||
| }, | ||
| { | ||
| "insertion": "ins_21305:GAGAGAGAGCAA", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_11305:ATTTCATTGTTT", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_28230:AAACTTGTCA", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_27687:T", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_27553:TGATCAG", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_29903:NNNNNNNNNNNNNNNNN", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_29727:GG", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_29053:A", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_27672:A", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_29735:TACAGT", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_1813:A", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_20793:A", | ||
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| "insertion": "ins_11521:T", | ||
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| { | ||
| "insertion": "ins_2842:AC", | ||
| "count": 1 | ||
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| { | ||
| "insertion": "ins_7021:T", | ||
| "count": 1 | ||
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| { | ||
| "insertion": "ins_14898:A", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_17019:T", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_4013:AGC", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_28250:CT", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_29593:AT", | ||
| "count": 2 | ||
| }, | ||
| { | ||
| "insertion": "ins_2857:A", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_21102:T", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_27231:TACATGGGGG", | ||
| "count": 2 | ||
| }, | ||
| { | ||
| "insertion": "ins_19983:T", | ||
| "count": 1 | ||
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| { | ||
| "insertion": "ins_29725:T", | ||
| "count": 1 | ||
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| { | ||
| "insertion": "ins_29759:CACCGA", | ||
| "count": 1 | ||
| }, | ||
| { | ||
| "insertion": "ins_27863:TT", | ||
| "count": 1 | ||
| } | ||
| ] | ||
| } |
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