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GenomeView is a stand-alone genome browser and editor. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.

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genomeview

Documentation: http://genomeview.org/manual

Download: http://genomeview.org/jenkins/genomeview/

Webstart: http://genomeview.org/start/launch.jnlp

Import in Eclipse:

  • Make sure you have the EGit plugin or similar installed in Eclipse

  • Clone the repository: https://github.com/GenomeView/genomeview.git

  • Add all libraries in lib/ to the classpath

  • Add 'src' and 'resources' as source folders.

  • If you want to run the Unit tests:

    • Add a JUnit 4 library
    • Add the 'junit' folder as a source folder

Jannot

Old documentation from before Jannot was integrated within GenomeView

API docs are part of the download

  • Add all libraries in lib/ to the classpath

  • Add 'src' as a source folder.

  • If you want to run the Unit tests:

    • Add a JUnit 4 library to your Eclipse class path, there is a version included in the 'test/lib' folder
    • Add the 'test/src' folder as a source folder

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GenomeView is a stand-alone genome browser and editor. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.

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