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refactor: update to lastest version of gene-normalizer #146

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merged 2 commits into from
Apr 19, 2023
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@korikuzma korikuzma commented Apr 18, 2023

close #145

Needed for work in this variation normalizer issue

  • QueryHandler now accepts Database instance in the latest version
  • CoolSeqTool now has a gene_query_handler instance var

QueryHandler now accepts Database instance in the latest version
@korikuzma korikuzma added priority:high High priority build Changes that affect the build system or dependencies labels Apr 18, 2023
@korikuzma korikuzma self-assigned this Apr 18, 2023
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We'll need to update gene-norm dependencies to be 0.1.34+/0.2.9+ since that was a breaking change

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We'll need to update gene-norm dependencies to be 0.1.34+/0.2.9+ since that was a breaking change

@jsstevenson I'm not sure what the notation is for allowing multiple minor versions, while also excluding some older versions. I'm looking at this.

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@korikuzma yeah that's a good point. Pinning 0.1.29+ at least solves half of the problem (sort of joking, but sort of serious)

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korikuzma commented Apr 18, 2023

@korikuzma yeah that's a good point. Pinning 0.1.29+ at least solves half of the problem (sort of joking, but sort of serious)

@jsstevenson we could do something like this

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@korikuzma Fine w/ me

@korikuzma korikuzma linked an issue Apr 19, 2023 that may be closed by this pull request
@korikuzma korikuzma merged commit e8c4eb2 into staging Apr 19, 2023
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@korikuzma korikuzma deleted the issue-145 branch April 19, 2023 14:03
@github-actions github-actions bot mentioned this pull request Apr 19, 2023
korikuzma added a commit that referenced this pull request Apr 19, 2023
* gene-normalizer versions allowed: >= 0.1.34 OR >= 0.2.9
  * QueryHandler now accepts Database instance in the latest version
* CoolSeqTool now has a gene_query_handler instance var
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Update gene-normalizer
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