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Merge Develop into Master #174

Merged
merged 71 commits into from
May 22, 2017
Merged

Merge Develop into Master #174

merged 71 commits into from
May 22, 2017

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mcgarth
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@mcgarth mcgarth commented May 21, 2017

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Sarah Lawrie and others added 30 commits March 21, 2017 16:27
README.rst
1fab6da
@basaks
refactored pyaps and timeseries
bcd8443
@basaks
read in config variables for atmfit
14347fe
@basaks
refactoring for spatio temporal filter integration
f7ef408
@basaks
write output files once
7099f11
@basaks
some more writes performed once during ts output
1d13c62
@basaks
more refactoring and reuse
18b77bc
@basaks
added high pass temporal filter parameters to configs
6aab9f4
@basaks
temporal low pass filter implemented
8db70fd
@basaks
refactored to fix py27 imports
6c60173
@basaks
removed import from test suite
70e3959
@basaks
added configs dict to log
6921777
@basaks
temporal filter matches with part of the image
10a323e
@basaks
temporal low pass filter matches matlab
08e4aae
@basaks
fixed py2 aps test
994f6bf
@basaks
temporal low pass filter triangular method tested and some optimisation
1280693
@basaks
[aps, tltfilter] efficiency improved by skipping a lot of if statements
f02bc2a
@basaks
[aps, tltfilter] mean filter tested vs matlab
a66fbc1
@basaks
[aps, tltfilter] improved tests
8f5b33b
@basaks
[aps] started writing slpfilter, and refactoring
21ed92b
@basaks
[aps, slpfilter] more work done on slpfilter
564316b
@basaks
[aps, slpfilter] use alpha to determine cutoff
cb0304f
@basaks
[aps, slpfilter] tests for butterworth and gaussian filters
e5bc001
@basaks
[aps, slpfilter] docstrings
cf35395
@basaks
[aps, slpfilter] accumulation test
ce11ef0
@basaks
[aps, cvd, slpfilter] changes in cvd for reuse in slpfilter
1b65aff
@basaks
[vcm] same maxdist as in matlab and refactoring for memory efficiency
7e72ba5
@basaks
[vcm] consistent maxbin during alpha calc
dbb8484
@basaks
[cvd] now alpha mataches matlab exactly every step
73b3f2e
@basaks
[aps, slpfilter] tests for auto-cutoff freq (using cvd alpha)
57e6b97
basaks and others added 23 commits April 21, 2017 09:56
@basaks
more docstrings for cvd functions
fade47a
@basaks
fixed bug in saving auto correlation graph and added tests
95849d5
@basaks
more refactoring and numpy typecasting to reduce memory usage
87092e6
@basaks
need to change dtype to complex64
59a3ba4
@basaks
calc_alpha = true
91401bb
@basaks
merged develop
65e94c1
@basaks
[aps, slpfilter] various interpolation options in addition to zerofill
7093702
@basaks
[aps, slpfilter] basic test for interpolation
bdd1cfe
@basaks
[aps, slpfilter] 3d interpolation tests
fc75371
@basaks
update demo configs
640420e
@basaks
pbs commands augmented
b622e52
Merge pull request #167 from GeoscienceAustralia/slp_interp
655b415 
Slpfilter interpolation option
@basaks
add optional time series calculation setting
1c7d0fe
@basaks
refactor orbital correction status check to shared module
2113388
@basaks
add ref_phs_est status check using shared function
812397c
@basaks
merged issue_166
21bd6a8
@basaks
add status check for spatio-temporal filter correction
d4d130e
@basaks
remove pyaps/weather model functionality for time being
b686f75
@basaks
add method to time series log messages
85181cd
@basaks
pylint checks
045d1eb
Merge pull request #169 from GeoscienceAustralia/issue_166
4f79771 
Issue 166
Merge PR #171
b87e4ef 
* update algorithm doco
* update config doco strings
* refactor code: pixel_res and raw data checking
* update doco in gamma module
* update doco for roipac module
* update doco for gdal_pyrate module
* update linrate module doco
* update doco for matlab_mst module and some refactoring
* update doco in MST module
* make all matlab_mst functions hidden
* update doco for orbital module
* update prepifg function doco
* update pyrate log functions doco
* update ref_phs_est doco
*  update ref pixel doco
* update shared module doco and refactor some elements
* update timeseries module doco
*  update doco in covariance module
*  update doco in scripts and some minor refactoring of functionality
*  update main script doco
*  update aps module doco
* refactor aps module
* update mpiops module doco
* improve Luigi task doco
* incorporate changes from sarah-dev branch
* Update README.rst
* [run_pyrate] fix mpi tests
Merge develop_doco into develop (#173)
73b0c8f 
* spell out abbreivated name APS in full
* change reference to PBS to HPC
* spell out abbreviated MST in full
* change reference to vcm to covariance
* fix line error for sphinx
* fix line error for sphinx
* reformat warning statements in docstrings to be compatible with sphinx
* fix docstrings with asterix to be literal instead of emphasis for sphinx
* minor changes to docstrings to fix formatting for sphinx
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Coverage Status

Coverage decreased (-0.8%) to 95.119% when pulling 73b0c8f on develop into caf9c8c on master.

@coveralls
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Coverage Status

Coverage decreased (-1.0%) to 94.987% when pulling a60728f on develop into caf9c8c on master.

@mcgarth mcgarth merged commit a77f6ee into master May 22, 2017
@mcgarth mcgarth deleted the develop branch May 22, 2017 07:26
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@mcgarth @coveralls @basaks