Merge 2e86de3 into 3f7d50a

docs/install.rst

@@ -115,7 +115,48 @@ Unix
 ~~~~
 From the base directory, execute the build process::
 
-    python intaller/setup.py build_ext -i
+    python installer/setup.py build_ext -i
+
+Ubuntu
+~~~~~~
+The github branch issue_25 (created from the v2.0 branch) had an environment created by `installing miniconda
+<https://conda.io/docs/install/quick.html#linux-miniconda-install>`_ and executing the following commands.
+
+        ~/miniconda2/bin/conda create --name tcrm
+        ~/miniconda2/bin/source activate tcrm
+        ~/miniconda2/bin/conda install numpy
+        ~/miniconda2/bin/conda install scipy
+        ~/miniconda2/bin/conda install matplotlib
+        ~/miniconda2/bin/conda install basemap
+        ~/miniconda2/bin/conda install netcdf4
+        ~/miniconda2/bin/conda install shapely
+        ~/miniconda2/bin/conda install Tornado
+        ~/miniconda2/bin/conda install statsmodel
+        ~/miniconda2/bin/conda install seaborn
+        ~/miniconda2/bin/pip --proxy=http://localhost:3128 install simplejson
+
+
+The following libraries were needed to compile the C extensions, and run the unit tests:
+    sudo apt install libgl1-mesa-glx
+    sudo apt-get install python-numpy-dev
+
+The C extensions were compiled from the trcm directory with:
+        (tcrm) user@server:~/tcrm$ python intaller/setup.py build_ext -i
+
+An error occurred where the include file seems to have changed paths. It may be a one off,
+or it may reoccur in another version of Linux. The error was in KPDF.c and the change was to
+comment out one line and replace it with another.
+
+        #include "numpy/arrayobject.h"
+        /* #include "arrayobject.h" */
+
+A requiremements file was created in the root directory called ``linux_v20.yml`` and should (it hasn't been tested)
+replace the ``conda install`` commands above. The command to use this file is:
+
+        conda env create -f linux_v20.yml
+
+Activating the environment would be
+        source activate linux_v20
 
 
 Windows
@@ -168,3 +209,4 @@ Windows system. This test failure will appear as::
     FAILED (failures=1)
 
 Such an error will not affect model execution.
+

linux_v20.yml

@@ -0,0 +1,80 @@
+name: tcrm
+channels:
+- defaults
+dependencies:
+- backports=1.0=py27_0
+- backports_abc=0.5=py27_0
+- basemap=1.0.7=np111py27_0
+- cairo=1.14.8=0
+- curl=7.49.0=1
+- cycler=0.10.0=py27_0
+- dbus=1.10.10=0
+- expat=2.1.0=0
+- fontconfig=2.12.1=3
+- freetype=2.5.5=2
+- functools32=3.2.3.2=py27_0
+- geos=3.4.2=0
+- glib=2.50.2=1
+- gst-plugins-base=1.8.0=0
+- gstreamer=1.8.0=0
+- harfbuzz=0.9.39=2
+- hdf4=4.2.12=1
+- hdf5=1.8.17=1
+- icu=54.1=0
+- jpeg=9b=0
+- libffi=3.2.1=1
+- libgcc=5.2.0=0
+- libgfortran=3.0.0=1
+- libiconv=1.14=0
+- libnetcdf=4.4.1=1
+- libpng=1.6.27=0
+- libxcb=1.12=1
+- libxml2=2.9.4=0
+- matplotlib=1.5.1=np111py27_0
+- mkl=2017.0.1=0
+- netcdf4=1.2.4=np111py27_0
+- numpy=1.11.3=py27_0
+- openssl=1.0.2l=0
+- pandas=0.20.1=np111py27_0
+- pango=1.40.3=1
+- patsy=0.4.1=py27_0
+- pcre=8.39=1
+- pip=9.0.1=py27_1
+- pixman=0.34.0=0
+- pycairo=1.10.0=py27_0
+- pyparsing=2.1.4=py27_0
+- pyqt=4.11.4=py27_4
+- python=2.7.13=0
+- python-dateutil=2.6.0=py27_0
+- pytz=2017.2=py27_0
+- qt=4.8.7=4
+- readline=6.2=2
+- scipy=0.19.0=np111py27_0
+- seaborn=0.7.1=py27_0
+- setuptools=27.2.0=py27_0
+- shapely=1.5.16=py27_0
+- simplejson=3.10.0=py27_0
+- singledispatch=3.4.0.3=py27_0
+- sip=4.18=py27_0
+- six=1.10.0=py27_0
+- sqlite=3.13.0=0
+- ssl_match_hostname=3.4.0.2=py27_1
+- statsmodels=0.8.0=np111py27_0
+- subprocess32=3.2.7=py27_0
+- tk=8.5.18=0
+- tornado=4.5.1=py27_0
+- wheel=0.29.0=py27_0
+- zlib=1.2.8=3
+- pip:
+  - backports-abc==0.5
+  - backports.ssl-match-hostname==3.4.0.2
+  - click==6.7
+  - colormap==1.0.1
+  - flask==0.12.2
+  - itsdangerous==0.24
+  - jinja2==2.9.6
+  - markupsafe==1.0
+  - redis==2.10.5
+  - werkzeug==0.12.2
+prefix: /home/u53337/miniconda2/envs/tcrm
+