CeRNA Results File Description

1. miRNA_mRNA: Results of miRNA mRNA association analysis RNA_1-RNA_2.cortest.xls: Table of miRNAs and mRNA targeting this miRNA in all samples Obtain correlation analysis results; RNA_1-RNA_2. corr. list: A list of miRNAs with negative correlation between expression levels and targeted mRNA identified in the above results And its correlation analysis information.
2. miRNA_lncRNA: Results of association analysis between miRNA and lncRNA Mature. Miranda targets transcript. pairs: Based on the miRNA predicted by miRanda software in all samples and its correlation with A list of lncRNA IDs with targeted relationships; [For animals] Mature. psRobot targets transcript. pairs: miRNAs predicted by psRobot software in all samples and their correlation with A list of lncRNA IDs with targeted relationships; [For Plants] RNA_1-RNA_2.cortest.xls: Table of miRNAs and lncRNAs with a targeting relationship to this miRNA in all samples Obtain correlation analysis results; RNA_1-RNA_2.corr.list: A list of miRNAs with negative correlation in expression levels and targeted lncRNAs identified from the above results And its correlation analysis information;
3. miRNA_circRNA: Results of association analysis between miRNA and circRNA RNA_1-RNA_2.cortest.xls: Table of miRNAs and circRNAs with a targeting relationship to this miRNA in all samples Obtain correlation analysis results; RNA_1-RNA_2.corr.list: A list of miRNAs with negative correlation in expression levels and targeted circRNAs identified from the above results And its correlation analysis information;
4. lncRNA_miRNA_mRNA: LncRNA miRNA mRNA Association Network Results LncRNA_miRNA_mRNA. cor.xls: miRNA, which has a targeting relationship with this miRNA and has a negative correlation with its expression level MRNA, lncRNAs that have a targeting relationship with the miRNA and have a negative correlation in expression levels, and the correlation analysis results; LncRNA_miRNA_mRNA. cor. gene. xls: miRNA, which has a targeting relationship with this miRNA and has a negative expression level The mRNA of Guan, lncRNA with a targeting relationship and a negative correlation in expression level with this miRNA, is correlated at the gene level Analysis results LncRNA_miRNA_mRNA. cytosape. txt. top200. txt: miRNA, which has a targeting relationship with this miRNA and is expressed MRNA or lncRNA with negative horizontal correlation, this file is the top 200 of lncRNA_miRNA_mRNA.cytosape.txt Line; It is also the input file for network diagram drawing in this folder. LncRNA miRNA mRNA association network obtained from lncRNA_miRNA_mRNA.cytosape.txt. top200.txt plot Network diagram (PDF); LncRNA_miRNA_mRNA. network.png: Utilizing R packet igraph based on LncRNA miRNA mRNA association network obtained from lncRNA_miRNA_mRNA.cytosape.txt. top200.txt plot Network Graph (PNG); LncRNA_miRNA_mRNA. network. txt: miRNA, which has a targeting relationship with the miRNA and has a negative expression level All ce network results of mRNA or lncRNA related to the target can be directly inputted into Cytoscape software to obtain ce Network diagram. LncRNA_miRNA_mRNA.annot.txt: This file is the lncRNA_miRNA_mRNA.network.txt network file The annotation information can be directly imported into Cytoscape software to classify RNA types of nodes in the CE network.