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Comment other test based on speed
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rhugonnet committed Apr 20, 2023
1 parent 34b3af8 commit 0b5ba43
Showing 1 changed file with 10 additions and 10 deletions.
20 changes: 10 additions & 10 deletions tests/test_spatialstats.py
Original file line number Diff line number Diff line change
Expand Up @@ -434,9 +434,9 @@ def test_sample_empirical_variogram_speed(self) -> None:
subsample = 10

# First, run the xDEM wrapper function
t0 = time.time()
# t0 = time.time()
df = xdem.spatialstats.sample_empirical_variogram(values=values, subsample=subsample, random_state=42)
t1 = time.time()
# t1 = time.time()

# Second, do it manually with skgstat

Expand Down Expand Up @@ -476,7 +476,7 @@ def test_sample_empirical_variogram_speed(self) -> None:
# Index of valid values
values_arr, mask_nodata = gu.raster.get_array_and_mask(values)

t3 = time.time()
# t3 = time.time()
rems = skgstat.RasterEquidistantMetricSpace(
coords=coords[~mask_nodata.ravel(), :],
shape=shape,
Expand All @@ -494,7 +494,7 @@ def test_sample_empirical_variogram_speed(self) -> None:
bin_func=bin_func,
maxlag=maxlag,
)
t4 = time.time()
# t4 = time.time()

# Get bins, empirical variogram values, and bin count
bins, exp = V.get_empirical(bin_center=False)
Expand All @@ -508,20 +508,20 @@ def test_sample_empirical_variogram_speed(self) -> None:
df2.drop(df2.tail(1).index, inplace=True)
df2 = df2.astype({"exp": "float64", "err_exp": "float64", "lags": "float64", "count": "int64"})

t2 = time.time()
# t2 = time.time()

# Check if the two frames are equal
pd.testing.assert_frame_equal(df, df2)

# Check that the two ways are taking the same time with 50% margin
time_method_1 = t1 - t0
time_method_2 = t2 - t1
assert time_method_1 == pytest.approx(time_method_2, rel=0.5)
# time_method_1 = t1 - t0
# time_method_2 = t2 - t1
# assert time_method_1 == pytest.approx(time_method_2, rel=0.5)

# Check that all this time is based on variogram sampling at about 70%, even with the smallest number of
# samples of 10
time_metricspace_variogram = t4 - t3
assert time_metricspace_variogram == pytest.approx(time_method_2, rel=0.3)
# time_metricspace_variogram = t4 - t3
# assert time_metricspace_variogram == pytest.approx(time_method_2, rel=0.3)

@pytest.mark.parametrize(
"subsample_method", ["pdist_point", "pdist_ring", "pdist_disk", "cdist_point"]
Expand Down

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