Make xdem compatible for Binder (#312)

* Add a binder folder

* Add geoutils/xdem in conda dep directly. Add jupytext.

* Test fixing issue with opencv import

* Add postbuild command to install xdem with pip and copy main environment file

* Try with environment update only

* Test without the postbuild

* Another test

* Test symlink to main environment.yml

* Re-add pip install command

* Remove redundant jupyter requirement, add pip to avoid warning

* Add pip to dev-env to match change in env

Co-authored-by: rhugonne <romain.hugonnet@gmail.com>

binder/apt.txt

@@ -0,0 +1 @@
+libgl1-mesa-glx

binder/environment.yml

@@ -0,0 +1 @@
+../environment.yml

binder/extra-environment.yml

@@ -0,0 +1,4 @@
+channels:
+  - conda-forge
+dependencies:
+  - jupytext

binder/postBuild

@@ -0,0 +1,6 @@
+#!/bin/bash
+set -e  # To avoid silent errors
+
+# ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml"
+pip install -e .
+${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "binder/extra-environment.yml"

dev-environment.yml

@@ -20,6 +20,7 @@ dependencies:
   - proj-data
   - scikit-gstat>=0.6.8
   - pytransform3d
+  - pip
 
   # Development-specific
   - autovizwidget

environment.yml

@@ -20,6 +20,7 @@ dependencies:
   - proj-data
   - scikit-gstat>=0.6.8
   - pytransform3d
+  - pip
 
   - pip:
     - geoutils==0.0.9