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Refactor CAG refinement process #45

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merged 5 commits into from Sep 2, 2020
Merged

Refactor CAG refinement process #45

merged 5 commits into from Sep 2, 2020

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sminot
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@sminot sminot commented Sep 2, 2020

This refactor is purely for computational efficiency. Instead of iterating over the gene abundance zarr in every step, the CAG abundance is computed at each step and passed along to the next step in the process.

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sminot commented Sep 2, 2020

Passes local tests

@sminot sminot merged commit c8b5c21 into master Sep 2, 2020
@sminot sminot deleted the refine_cags_refactor branch September 2, 2020 23:50
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