Feat: Onboard MERFISH Mouse Brain Receptor Map dataset (#457)

datasets/merfish/infra/cell_by_gene_pipeline.tf

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+/**
+ * Copyright 2022 Google LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+resource "google_bigquery_table" "merfish_cell_by_gene" {
+  project     = var.project_id
+  dataset_id  = "merfish"
+  table_id    = "cell_by_gene"
+  description = "The Merfish Mouse Brain Dataset"
+  depends_on = [
+    google_bigquery_dataset.merfish
+  ]
+}
+
+output "bigquery_table-merfish_cell_by_gene-table_id" {
+  value = google_bigquery_table.merfish_cell_by_gene.table_id
+}
+
+output "bigquery_table-merfish_cell_by_gene-id" {
+  value = google_bigquery_table.merfish_cell_by_gene.id
+}

datasets/merfish/infra/cell_metadata_pipeline.tf

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+/**
+ * Copyright 2022 Google LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+resource "google_bigquery_table" "merfish_cell_metadata" {
+  project     = var.project_id
+  dataset_id  = "merfish"
+  table_id    = "cell_metadata"
+  description = "The Merfish Mouse Brain Dataset"
+  depends_on = [
+    google_bigquery_dataset.merfish
+  ]
+}
+
+output "bigquery_table-merfish_cell_metadata-table_id" {
+  value = google_bigquery_table.merfish_cell_metadata.table_id
+}
+
+output "bigquery_table-merfish_cell_metadata-id" {
+  value = google_bigquery_table.merfish_cell_metadata.id
+}

datasets/merfish/infra/detected_transcripts_pipeline.tf

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+/**
+ * Copyright 2022 Google LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+resource "google_bigquery_table" "merfish_detected_transcripts" {
+  project     = var.project_id
+  dataset_id  = "merfish"
+  table_id    = "detected_transcripts"
+  description = "The Merfish Mouse Brain Dataset"
+  depends_on = [
+    google_bigquery_dataset.merfish
+  ]
+}
+
+output "bigquery_table-merfish_detected_transcripts-table_id" {
+  value = google_bigquery_table.merfish_detected_transcripts.table_id
+}
+
+output "bigquery_table-merfish_detected_transcripts-id" {
+  value = google_bigquery_table.merfish_detected_transcripts.id
+}

datasets/merfish/infra/merfish_dataset.tf

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+/**
+ * Copyright 2022 Google LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+resource "google_bigquery_dataset" "merfish" {
+  dataset_id = "merfish"
+  project    = var.project_id
+}
+
+output "bigquery_dataset-merfish-dataset_id" {
+  value = google_bigquery_dataset.merfish.dataset_id
+}

datasets/merfish/infra/provider.tf

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+/**
+ * Copyright 2022 Google LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+provider "google" {
+  project                     = var.project_id
+  impersonate_service_account = var.impersonating_acct
+  region                      = var.region
+}
+
+data "google_client_openid_userinfo" "me" {}
+
+output "impersonating-account" {
+  value = data.google_client_openid_userinfo.me.email
+}

datasets/merfish/infra/variables.tf

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+/**
+ * Copyright 2022 Google LLC
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+variable "project_id" {}
+variable "bucket_name_prefix" {}
+variable "impersonating_acct" {}
+variable "region" {}
+variable "env" {}
+variable "iam_policies" {
+  default = {}
+}
+