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NucleoATAC ran out of memory #71

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bliu100 opened this issue Oct 25, 2017 · 0 comments
Open

NucleoATAC ran out of memory #71

bliu100 opened this issue Oct 25, 2017 · 0 comments

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@bliu100
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bliu100 commented Oct 25, 2017

Hi,
I was running NucleoATAC on my server. It ran about 10 minutes and the memory usage was over the memory setting (128G). Did I miss anything here? Thanks

nucleoatac run --bed B.signal.bed --bam B.bam --fasta mm9.fa --out B_out

PBS Job Id: 1918571.xxxxxxxx
Job Name: ATAC_NucleoATAC_WT_B_file
Exec host: cnodexxxxx
Execution terminated
Exit_status=271
resources_used.cput=00:10:04
resources_used.energy_used=0
resources_used.mem=147916264kb
resources_used.vmem=149668320kb
resources_used.walltime=00:10:03
Error_Path: cnodexxxx:/xxxxxxx/ATAC_seq/mm9_result2/logs.$PBS_JOBID.e
Output_Path: cnodexxxx:/xxxxxxx/ATAC_seq/mm9_result2/logs.$PBS_JOBID.o

PBS Job Id: 1918571.xxxxxxxx
Job Name: ATAC_NucleoATAC_WT_B_file
Exec host: cnodexxxxxxx
job deleted
Job deleted at request of root@cnodexxxxxxxxx
job 1918571 exceeded JOBMEM usage hard limit (138896 > 131072)

@bliu100 bliu100 changed the title NucleoATAC run out of memory NucleoATAC ran out of memory Oct 25, 2017
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