unit test

YuLab-SMU · Aug 16, 2016 · d724ca7 · d724ca7
1 parent 3ded5a1
commit d724ca7
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Showing 4 changed files with 9 additions and 5 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: ChIPseeker
 Type: Package
 Title: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
-Version: 1.9.6
+Version: 1.9.7
 Authors@R: c(person(given = "Guangchuang", family = "Yu",
 	            email = "guangchuangyu@gmail.com",
 		    role  = c("aut", "cre")),

diff --git a/NEWS b/NEWS
@@ -1,6 +1,9 @@
-CHANGES IN VERSION 1.9.6
+CHANGES IN VERSION 1.9.7
 ------------------------
  o unit test <2016-08-16, Tue>
+
+CHANGES IN VERSION 1.9.6
+------------------------
  o update vignette <2016-08-16, Tue>
 
 CHANGES IN VERSION 1.9.5

diff --git a/appveyor.yml b/appveyor.yml
@@ -24,7 +24,7 @@ install:
 # Adapt as necessary starting from here
 
 build_script:
-  - travis-tool.sh install_bioc BiocStyle AnnotationDbi DO.db DOSE org.Hs.eg.db TxDb.Hsapiens.UCSC.hg19.knownGene
+  - travis-tool.sh install_bioc BiocStyle IRanges AnnotationDbi DO.db DOSE org.Hs.eg.db TxDb.Hsapiens.UCSC.hg19.knownGene
   - travis-tool.sh install_deps
 
 test_script:

diff --git a/tests/testthat/test-txdb.R b/tests/testthat/test-txdb.R
@@ -5,8 +5,9 @@ context("TXDB")
 
 test_that("txdb", {
     txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene
+    ChIPseeker:::.ChIPseekerEnv(txdb)
     expect_equal(ChIPseeker:::IDType(txdb), "Entrez Gene ID")
     expect_equal(ChIPseeker:::TXID2EG("70455"), "uc002qsd.4/1")
-    expect_equal(ChIPseeker:::TXID2EG("70455", geneOnly=TRUE), "1")
-}
+    expect_equal(ChIPseeker:::TXID2EG("70455", geneIdOnly=TRUE), "1")
+})