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Hi,
I've just updated to the latest version of R and ggtree, and viewClade has stopped working (presumably something to do with scaling). In the example below, the tree basically rescales to a single branch. I've never noticed this behaviour before, and I'm using trees I've plotted before with the same code. Please see my example:
Hi,
I've just updated to the latest version of R and ggtree, and viewClade has stopped working (presumably something to do with scaling). In the example below, the tree basically rescales to a single branch. I've never noticed this behaviour before, and I'm using trees I've plotted before with the same code. Please see my example:
Full Tree
zoomed clade 17
R version 3.5.1 (2018-07-02)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: OS X El Capitan 10.11.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] treeio_1.4.2 BiocInstaller_1.30.0 bindrcpp_0.2.2 rPinecone_0.1.0 randomcoloR_1.1.0 gridExtra_2.3
[7] reshape2_1.4.3 dplyr_0.7.6 plyr_1.8.4 phytools_0.6-44 maps_3.3.0 ggtree_1.12.6
[13] ape_5.1 ggplot2_3.0.0
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