MITE

MITE (Matrix of Intensity by Time of Elution)-based, phyloproteomic analyses

Steps to install and run this project:

Download and install docker

You might want to add your user to the Docker group in order to run the docker commands without sudo.

In the project root folder, run the following commands:

foo@bar:~$ docker image build -t mite .

foo@bar:~$ docker container run -it --name mite -v $(pwd):/user/src/mite mite

Now you should have a console inside the project container. Run the following command to run the project pipeline.

root@bar:/user/src/mite# cd src/mite/ && python pipeline.py --nproc 4 --window_height 12 --window_width 12

To exit the container console, run the exit command:

root@bar:/user/src/mite# exit

In order to remove the container and image from your system, run the following command:

foo@bar:~$ docker container rm mite && docker image rm mite