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Fix another performance issue in group stats #146

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merged 2 commits into from
Jul 23, 2021
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- According to Lindquist et al. <https://doi.org/fzx69f> the chi square
  distribution with one degree of freedom is not a good null
  distribution, so the cannot use it for the likelihood ratio test
- Also, the `chisq2z_convert` method is quite slow, so this will lead to
  a big speed up
- Also, refactor some code
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Codecov Report

Merging #146 (a5bab5e) into master (e626f0b) will increase coverage by 0.00%.
The diff coverage is 78.94%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #146   +/-   ##
=======================================
  Coverage   52.17%   52.18%           
=======================================
  Files         209      209           
  Lines       11094    11096    +2     
  Branches     1903     1903           
=======================================
+ Hits         5788     5790    +2     
  Misses       4919     4919           
  Partials      387      387           
Impacted Files Coverage Δ
halfpipe/stats/heterogeneity.py 87.50% <60.00%> (-0.16%) ⬇️
halfpipe/stats/fit.py 81.92% <100.00%> (+0.44%) ⬆️
halfpipe/stats/miscmaths.py 95.87% <100.00%> (ø)
halfpipe/workflow/model/base.py 14.61% <100.00%> (+0.66%) ⬆️

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@HippocampusGirl HippocampusGirl merged commit 84cf419 into master Jul 23, 2021
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2 participants