Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Check failure with dev version of dbplyr #50

Open
hadley opened this issue Jan 3, 2019 · 0 comments
Open

Check failure with dev version of dbplyr #50

hadley opened this issue Jan 3, 2019 · 0 comments

Comments

@hadley
Copy link

hadley commented Jan 3, 2019

Running examples in ‘metagenomeFeatures-Ex.R’ failed
The error most likely occurred in:

> ### Name: MgDb-class
> ### Title: Metagenome Database class
> ### Aliases: MgDb-class mgdb
> 
> ### ** Examples
> 
> # example MgDb-class object, Greengenes 13.8 85% OTUs database.
> gg85 <- get_gg13.8_85MgDb()
Error in validObject(.Object) : 
  invalid class “MgDb” object: 1: invalid object for slot "taxa" in class "MgDb": got class "tbl_SQLiteConnection", should be or extend class "tbl_dbi"
invalid class “MgDb” object: 2: invalid object for slot "taxa" in class "MgDb": got class "tbl_dbi", should be or extend class "tbl_dbi"
invalid class “MgDb” object: 3: invalid object for slot "taxa" in class "MgDb": got class "tbl_sql", should be or extend class "tbl_dbi"
invalid class “MgDb” object: 4: invalid object for slot "taxa" in class "MgDb": got class "tbl_lazy", should be or extend class "tbl_dbi"
invalid class “MgDb” object: 5: invalid object for slot "taxa" in class "MgDb": got class "tbl", should be or extend class "tbl_dbi"
Calls: get_gg13.8_85MgDb ... newMgDb -> new -> initialize -> initialize -> validObject
Execution halted

Presumably because I tweaked the class structure slightly

hadley added a commit to tidyverse/dbplyr that referenced this issue Jan 9, 2019
* pool needs fix
* BioC package issue at HCBravoLab/metagenomeFeatures#50
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant