Merge pull request #486 from lukemartinlogan/master

Hermes 0.9.5

.gitignore

@@ -7,8 +7,7 @@ GTAGS
 
 .gdb_history
 
-/cmake-build-debug/
-/cmake-build-release/
+/cmake-build-*
 /.idea/
 /.clang-format
 __pycache__/

adapter/test/mpiio/CMakeLists.txt

@@ -6,8 +6,9 @@ target_link_libraries(hermes_mpiio_adapter_test hermes_mpiio)
 add_dependencies(hermes_mpiio_adapter_test hermes_mpiio hermes_daemon)
 set_target_properties(hermes_mpiio_adapter_test PROPERTIES COMPILE_FLAGS "-DHERMES_INTERCEPT=1")
 
-mpi_daemon(hermes_mpiio_adapter_test 2 "[synchronicity=async] -d yes" "async" 1)
-mpi_daemon(hermes_mpiio_adapter_test 2 "[synchronicity=sync] -d yes" "sync" 1)
+# TODO(llogan): add back
+# mpi_daemon(hermes_mpiio_adapter_test 2 "[synchronicity=async] -d yes" "async" 1)
+# mpi_daemon(hermes_mpiio_adapter_test 2 "[synchronicity=sync] -d yes" "sync" 1)
 
 set(MPIIO_TESTS
   mpiio_adapter_test

ci/install_deps.sh

@@ -20,6 +20,8 @@ set -x
 set -e
 set -o pipefail
 
+sudo apt-get install -y pkg-config
+
 # Change this especially when your $HOME doesn't have enough disk space. 
 INSTALL_DIR="${HOME}/${LOCAL}"
 

hermes_shm/include/hermes_shm/constants/data_structure_singleton_macros.h

@@ -0,0 +1,27 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Distributed under BSD 3-Clause license.                                   *
+ * Copyright by The HDF Group.                                               *
+ * Copyright by the Illinois Institute of Technology.                        *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of Hermes. The full Hermes copyright notice, including  *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the COPYING file, which can be found at the top directory. If you do not  *
+ * have access to the file, you may request a copy from help@hdfgroup.org.   *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef HERMES_SHM_INCLUDE_HERMES_SHM_CONSTANTS_DATA_STRUCTURE_SINGLETON_MACROS_H_H
+#define HERMES_SHM_INCLUDE_HERMES_SHM_CONSTANTS_DATA_STRUCTURE_SINGLETON_MACROS_H_H
+
+#include <hermes_shm/util/singleton.h>
+
+#define HERMES_SHM_SYSTEM_INFO scs::Singleton<hermes_shm::SystemInfo>::GetInstance()
+#define HERMES_SHM_SYSTEM_INFO_T hermes_shm::SystemInfo*
+
+#define HERMES_SHM_MEMORY_MANAGER scs::Singleton<hermes_shm::ipc::MemoryManager>::GetInstance()
+#define HERMES_SHM_MEMORY_MANAGER_T hermes_shm::ipc::MemoryManager*
+
+#define HERMES_SHM_THREAD_MANAGER scs::Singleton<hermes_shm::ThreadManager>::GetInstance()
+#define HERMES_SHM_THREAD_MANAGER_T hermes_shm::ThreadManager*
+
+#endif  // include_labstor_constants_data_structure_singleton_macros_h

hermes_shm/include/hermes_shm/constants/macros.h

@@ -0,0 +1,30 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Distributed under BSD 3-Clause license.                                   *
+ * Copyright by The HDF Group.                                               *
+ * Copyright by the Illinois Institute of Technology.                        *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of Hermes. The full Hermes copyright notice, including  *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the COPYING file, which can be found at the top directory. If you do not  *
+ * have access to the file, you may request a copy from help@hdfgroup.org.   *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef HERMES_SHM_MACROS_H
+#define HERMES_SHM_MACROS_H
+
+#define KILOBYTES(n) ((size_t)(n) * (1<<10))
+#define MEGABYTES(n) ((size_t)(n) * (1<<20))
+#define GIGABYTES(n) ((size_t)(n) * (1<<30))
+
+#define TYPE_BITS(type) ((sizeof(type)*8))
+
+#define TYPE_WRAP(...) (__VA_ARGS__)
+
+#define TYPE_UNWRAP(X) ESC(ISH X)
+#define ISH(...) ISH __VA_ARGS__
+#define ESC(...) ESC_(__VA_ARGS__)
+#define ESC_(...) VAN ## __VA_ARGS__
+#define VANISH
+
+#endif  // HERMES_SHM_MACROS_H

hermes_shm/include/hermes_shm/data_structures/data_structure.h

@@ -0,0 +1,22 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Distributed under BSD 3-Clause license.                                   *
+ * Copyright by The HDF Group.                                               *
+ * Copyright by the Illinois Institute of Technology.                        *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of Hermes. The full Hermes copyright notice, including  *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the COPYING file, which can be found at the top directory. If you do not  *
+ * have access to the file, you may request a copy from help@hdfgroup.org.   *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef HERMES_SHM_DATA_STRUCTURES_DATA_STRUCTURE_H_
+#define HERMES_SHM_DATA_STRUCTURES_DATA_STRUCTURE_H_
+
+#include "internal/shm_archive.h"
+#include "internal/shm_container.h"
+#include "internal/shm_smart_ptr.h"
+#include "internal/shm_macros.h"
+#include "internal/shm_container.h"
+
+#endif  // HERMES_SHM_DATA_STRUCTURES_DATA_STRUCTURE_H_

hermes_shm/include/hermes_shm/data_structures/internal/shm_archive.h

@@ -0,0 +1,105 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Distributed under BSD 3-Clause license.                                   *
+ * Copyright by The HDF Group.                                               *
+ * Copyright by the Illinois Institute of Technology.                        *
+ * All rights reserved.                                                      *
+ *                                                                           *
+ * This file is part of Hermes. The full Hermes copyright notice, including  *
+ * terms governing use, modification, and redistribution, is contained in    *
+ * the COPYING file, which can be found at the top directory. If you do not  *
+ * have access to the file, you may request a copy from help@hdfgroup.org.   *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef HERMES_SHM_DATA_STRUCTURES_SHM_ARCHIVE_H_
+#define HERMES_SHM_DATA_STRUCTURES_SHM_ARCHIVE_H_
+
+#include "hermes_shm/memory/memory_manager.h"
+#include "shm_macros.h"
+
+namespace hermes_shm::ipc {
+
+/**
+ * Indicates that a data structure can be stored directly in memory or
+ * shared memory.
+ * */
+class ShmPredictable {};
+
+/**
+ * Indicates that a data structure can be archived in shared memory
+ * and has a corresponding TypedPointer override.
+ * */
+class ShmArchiveable : public ShmPredictable {
+  /**
+   * Initialize a SHM data structure in shared-memory.
+   * Constructors may wrap around these.
+   * */
+  // void shm_init(...);
+
+  /**
+   * Destroys the shared-memory allocated by the object.
+   * Destructors may wrap around this.
+   * */
+  // void shm_destroy();
+
+  /**
+   * Deep copy of an object. Wrapped by copy constructor
+   * */
+  // void shm_strong_copy(const CLASS_NAME &other);
+  // SHM_INHERIT_COPY_OPS(CLASS_NAME)
+
+  /**
+   * Copies only the object's pointers.
+   * */
+  // void WeakCopy(const CLASS_NAME &other);
+
+  /**
+   * Moves the object's contents into another object
+   * */
+  // void shm_weak_move(CLASS_NAME &other);
+  // SHM_INHERIT_MOVE_OPS(CLASS_NAME)
+
+  /**
+   * Store object into a TypedPointer
+   * */
+  // void shm_serialize(TypedPointer<TYPED_CLASS> &ar) const;
+  // SHM_SERIALIZE_OPS(TYPED_CLASS)
+
+  /**
+   * Construct object from a TypedPointer.
+   * */
+  // void shm_deserialize(const TypedPointer<TYPED_CLASS> &ar);
+  // SHM_DESERIALIZE_OPS(TYPED_CLASS)
+};
+
+/**
+ * Enables a specific TypedPointer type to be serialized
+ * */
+#define SHM_SERIALIZE_OPS(TYPED_CLASS)\
+  void operator>>(hipc::TypedPointer<TYPE_UNWRAP(TYPED_CLASS)> &ar) const {\
+    shm_serialize(ar);\
+  }\
+  void operator>>(hipc::TypedAtomicPointer<TYPE_UNWRAP(TYPED_CLASS)> &ar) const {\
+    shm_serialize(ar);\
+  }
+
+/**
+ * Enables a specific TypedPointer type to be deserialized
+ * */
+#define SHM_DESERIALIZE_OPS(TYPED_CLASS)\
+  void operator<<(const hipc::TypedPointer<TYPE_UNWRAP(TYPED_CLASS)> &ar) {\
+    shm_deserialize(ar);\
+  }\
+  void operator<<(\
+    const hipc::TypedAtomicPointer<TYPE_UNWRAP(TYPED_CLASS)> &ar) {\
+    shm_deserialize(ar);\
+  }
+
+/** Enables serialization + deserialization for data structures */
+#define SHM_SERIALIZE_DESERIALIZE_OPS(AR_TYPE)\
+  SHM_SERIALIZE_OPS(AR_TYPE)\
+  SHM_DESERIALIZE_OPS(AR_TYPE)
+
+
+}  // namespace hermes_shm::ipc
+
+#endif  // HERMES_SHM_DATA_STRUCTURES_SHM_ARCHIVE_H_