Restrict numpy version in Pipfile #991
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| pull_request: | |
| branches: [master] | |
| env: | |
| ROOT_DIR: ${{github.workspace}}/data | |
| jobs: | |
| build-and-test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| build-method: ["manual", "docker"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| shell: bash | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Install package | |
| shell: bash | |
| run: | | |
| pip install -e . | |
| - name: Run unit tests | |
| shell: bash | |
| run: | | |
| pytest | |
| - name: Start HSDS (Manual) | |
| shell: bash | |
| if: ${{matrix.build-method == 'manual'}} | |
| env: | |
| ADMIN_PASSWORD: admin | |
| ADMIN_USERNAME: admin | |
| USER_NAME: test_user1 | |
| USER_PASSWORD: test | |
| USER2_NAME: test_user2 | |
| USER2_PASSWORD: test | |
| HSDS_ENDPOINT: http://127.0.0.1:5101 | |
| BUCKET_NAME: hsdstest | |
| LOG_LEVEL: DEBUG | |
| run: | | |
| cp admin/config/groups.default admin/config/groups.txt | |
| cp admin/config/passwd.default admin/config/passwd.txt | |
| hsds --root_dir data --host localhost --port 5101 --password_file admin/config/passwd.txt --logfile hs.log --loglevel DEBUG --config_dir=admin/config --count=4 & | |
| - name: Start HSDS (Docker) | |
| shell: bash | |
| if: ${{matrix.build-method == 'docker' && matrix.os != 'windows-latest'}} | |
| env: | |
| ADMIN_PASSWORD: admin | |
| ADMIN_USERNAME: admin | |
| USER_NAME: test_user1 | |
| USER_PASSWORD: test | |
| USER2_NAME: test_user2 | |
| USER2_PASSWORD: test | |
| HSDS_ENDPOINT: http://127.0.0.1:5101 | |
| BUCKET_NAME: hsdstest | |
| LOG_LEVEL: DEBUG | |
| run: | | |
| cp admin/config/groups.default admin/config/groups.txt | |
| cp admin/config/passwd.default admin/config/passwd.txt | |
| ./build.sh --nolint | |
| ./runall.sh | |
| - name: Wait for node startup | |
| shell: bash | |
| run: | | |
| sleep 45 | |
| - name: Run HSDS tests | |
| if: ${{!(matrix.build-method == 'docker' && matrix.os == 'windows-latest')}} | |
| id: hsds-tests | |
| shell: bash | |
| env: | |
| ADMIN_PASSWORD: admin | |
| ADMIN_USERNAME: admin | |
| USER_NAME: test_user1 | |
| USER_PASSWORD: test | |
| USER2_NAME: test_user2 | |
| USER2_PASSWORD: test | |
| BUCKET_NAME: hsdstest | |
| LOG_LEVEL: DEBUG | |
| run: | | |
| python testall.py | |
| - name: Show HSDS Logs on Fail (Docker) | |
| # Only run if the whole workflow failed due to HSDS tests | |
| if: ${{failure() && steps.hsds-tests.outcome == 'failure' && (matrix.build-method == 'docker' && matrix.os != 'windows-latest')}} | |
| run: | | |
| docker logs hsds-sn-1 >&1 | |
| docker logs hsds-dn-1 >&1 | |
| docker logs hsds-dn-2 >&1 | |
| docker logs hsds-dn-3 >&1 | |
| docker logs hsds-dn-4 >&1 | |
| - name: Show HSDS Logs on Fail (Manual) | |
| # Only run if the whole workflow failed due to HSDS tests | |
| if: ${{failure() && steps.hsds-tests.outcome == 'failure' && (matrix.build-method == 'manual')}} | |
| run: | | |
| cat hs.log | |
| - name: Checkout h5pyd | |
| if: ${{ ( matrix.os != 'windows-latest' ) }} | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: HDFGroup/h5pyd | |
| path: ${{github.workspace}}/h5pyd | |
| - name: Install h5pyd | |
| if: ${{ ( matrix.os != 'windows-latest' ) }} | |
| working-directory: ${{github.workspace}}/h5pyd | |
| run: | | |
| pip install . -v | |
| - name: Create h5pyd test folder | |
| if: ${{ ( matrix.os != 'windows-latest' ) }} | |
| working-directory: ${{github.workspace}}/h5pyd | |
| env: | |
| HS_USERNAME: test_user1 | |
| HS_PASSWORD: test | |
| TEST2_USERNAME: test_user1 | |
| TEST2_PASSWORD: test | |
| H5PYD_TEST_FOLDER: /home/test_user1/h5pyd_tests/ | |
| HS_ENDPOINT: http://127.0.0.1:5101 | |
| run: | | |
| hstouch -e $HS_ENDPOINT /home/test_user1/h5pyd_tests/ | |
| - name: Run h5pyd tests | |
| if: ${{ ( matrix.os != 'windows-latest' ) }} | |
| working-directory: ${{github.workspace}}/h5pyd | |
| env: | |
| HS_USERNAME: test_user1 | |
| HS_PASSWORD: test | |
| TEST2_USERNAME: test_user1 | |
| TEST2_PASSWORD: test | |
| H5PYD_TEST_FOLDER: /home/test_user1/h5pyd_tests/ | |
| HS_ENDPOINT: http://127.0.0.1:5101 | |
| run: | | |
| python testall.py | |
| - name: Shut down Docker | |
| if: ${{matrix.build-method == 'docker' && matrix.os != 'windows-latest'}} | |
| run: | | |
| ./stopall.sh | |
| build-and-test-socket: | |
| env: | |
| ADMIN_PASSWORD: admin | |
| ADMIN_USERNAME: admin | |
| USER_NAME: test_user1 | |
| USER_PASSWORD: test | |
| USER2_NAME: test_user2 | |
| USER2_PASSWORD: test | |
| HSDS_USERNAME: test_user1 | |
| HSDS_PASSWORD: test | |
| HSDS_PATH: /home/test_user1/ | |
| HDF5_API_TEST_PATH_PREFIX: /home/test_user1/ | |
| HSDS_ENDPOINT: http+unix://%2Ftmp%2Fhs%2Fsn_1.sock | |
| HDF5_VOL_CONNECTOR: REST | |
| ROOT_DIR: ${{github.workspace}}/hsdsdata | |
| BUCKET_NAME: hsdstest | |
| name: Test HSDS with socket | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.12"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install HSDS dependencies | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install HSDS package | |
| shell: bash | |
| run: | | |
| pip install -e . | |
| # Requests 2.32.0 breaks requests-unixsocket, used by HSDS for socket connections | |
| # - name: Fix requests version | |
| # run: | | |
| # pip install requests==2.31.0 | |
| - name: Run HSDS unit tests | |
| shell: bash | |
| run: | | |
| pytest | |
| - name: Start HSDS | |
| run: | | |
| mkdir ${{github.workspace}}/hsdsdata | |
| mkdir ${{github.workspace}}/hsdsdata/hsdstest | |
| cp admin/config/groups.default admin/config/groups.txt | |
| cp admin/config/passwd.default admin/config/passwd.txt | |
| ROOT_DIR=${{github.workspace}}/hsdsdata ./runall.sh --no-docker 1 & | |
| sleep 10 | |
| - name: Test HSDS setup | |
| run: | | |
| python tests/integ/setup_test.py | |
| - name: Test HSDS | |
| run : | | |
| python testall.py |