Here is the code for our paper

1. find ONT and PacBio data overlap

python overlap.py ONT-methyfile PacBio-methyfile

2. GTF extract

note: methy3-file just extract chr, stat,end three columns from methy-file if you want to extract the number of UTR you need run this code

python GTF.py methy3-file UTR_annotation.gtf UTR