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Add support for query interval semantics #92

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tomwhite opened this issue May 5, 2016 · 0 comments
Open

Add support for query interval semantics #92

tomwhite opened this issue May 5, 2016 · 0 comments

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@tomwhite
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tomwhite commented May 5, 2016

Add a setQueryIntervals method to BAMInputFormat that takes a htsjdk QueryInterval. A QueryInterval can have 0/-1 as the end position to mean end of sequence. (See discussion in #82.)
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