Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits
TA_trait: raw and blup data of TA traits
pepper: GS in pepper accessions
pepper_MT: multi-trait GS in pepper accessions
tomato: GS in tomato accessions
tomato_MT: multi-trait GS in tomato accessions
tomato_wild_A: GS in wild tomato accessions of scenario A
tomato_wild_B: GS in wild tomato accessions of scenario B
There is one subfolder named "data" which includes all raw data (SNPs, TA and CD traits and corresponding groups).
The subfolder "fold" contains the cross-validation scenario data.
The subfolder "tag" contains the selected tag SNP of each scenario (in zip file) and tag SNP number in each chromosome.
For sigle-trait GS model, i.e. rrBLUP, RF, SVC, as well as multi-trait GS model (MT), the folder includes all codes and results used in this study.
Noted that the folder "rrBLUP_CD" is the one calculated the accracy based on the same quantile of CD trait.
Hao Tong, Amol N Nankar, Jintao Liu, Velichka Todorova, Daniela Ganeva, Stanislava Grozeva, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Tsanko Gechev, Dimitrina Kostova, Zoran Nikoloski, Genomic prediction of morphometric and colorimetric traits in Solanaceous fruits, Horticulture Research, Volume 9, 2022, uhac072, https://doi.org/10.1093/hr/uhac072 Please contact: tong@mpimp-golm.mpg.de