Plot-3D-Medical-Image

This tool is used for plot 3D-mask from medical images.

                              def plot_3D(_img, setting_color='silver', Spacing=None)

  The function has three parameters：_img、setting_color and Spacing

Parameters

   _img: 3D image data, which is a numpy array in np.uint8 format.The value is 255 or 0 (foreground or background)

  setting_color : select the color of foreground，by default "silver"."red"、"green" and "blue" are also available

  Spacing: set the spacing of the orignal image, by default None. When Spacing is not None ,this function will resample the image to the new spacing [1.0, 1.0, 1.0].Notably, Spacing must be a numpy array.

Requirements

  numpy

  scipy

  Simpleitk

  vtk

Install

                        pip install Plot-3D-Medical-Image

Example

from Medical_Image_Plot import plot_3D
import numpy as np

image = np.zeros((64, 64, 64), dtype=np.uint8)
for i in range(64):
    image[i, i:64-i, i:64-i]=255
# plot
plot_3D(image)