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@HassounLab

Hassoun Lab: Computational Systems + Synthetic Biology

Developing ANALYSIS + DESIGN tools to advance (re-)designing biology

Popular repositories

  1. GNN-SOM GNN-SOM Public

    Site-of-Metabolsim prediction using Graph Neural Networks.

    Jupyter Notebook 14 2

  2. EPP EPP Public

    Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"

    Python 12 3

  3. ASAP-SML ASAP-SML Public

    ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning

    Jupyter Notebook 11 2

  4. PUMA PUMA Public

    Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling

    Python 5

  5. Boost-RS Boost-RS Public

    Boosted Embeddings for Recommender Systems and its Application to Enzyme-Substrate Interaction Prediction

    Python 5 2

  6. PROXIMAL2 PROXIMAL2 Public

    PROXIMAL2 algorithm

    Python 5 2

Repositories

Showing 10 of 13 repositories
  • ESP Public

    ESP model

    Python 1 MIT 0 0 0 Updated Apr 7, 2024
  • Boost-RS Public

    Boosted Embeddings for Recommender Systems and its Application to Enzyme-Substrate Interaction Prediction

    Python 5 MIT 2 0 0 Updated Mar 6, 2024
  • BAM Public

    Biotransformation-based annotation method

    Python 3 0 0 0 Updated Jan 16, 2024
  • PROXIMAL2 Public

    PROXIMAL2 algorithm

    Python 5 2 1 0 Updated Oct 9, 2023
  • EPP Public

    Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"

    Python 12 3 0 0 Updated Aug 7, 2023
  • ASAP-SML Public

    ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning

    Jupyter Notebook 11 MIT 2 0 2 Updated Jul 6, 2023
  • GNN-SOM Public

    Site-of-Metabolsim prediction using Graph Neural Networks.

    Jupyter Notebook 14 MIT 2 0 0 Updated Mar 30, 2023
  • Python 0 MIT 1 0 0 Updated Feb 8, 2023
  • CSI Public
    Python 1 MIT 1 1 0 Updated Dec 12, 2022
  • MDFlow Public
    Python 0 0 0 0 Updated Dec 30, 2020

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