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@HelmchenLabSoftware

Helmchen Lab

Lab of Fritjof Helmchen at the Brain Research Institute at the University of Zurich

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  1. Cascade Cascade Public

    Calibrated inference of spiking from calcium ΔF/F data using deep networks

    Jupyter Notebook 108 30

  2. Centripetal_propagation_astrocytes Centripetal_propagation_astrocytes Public

    Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

    MATLAB 4

  3. OCIA OCIA Public

    Calcium Imaging Analysis pipeline with a flexible framework

    MATLAB 3 3

  4. CaImAn_DendriteAnalysis CaImAn_DendriteAnalysis Public

    Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.

    Jupyter Notebook 2 3

  5. CaImAn_LocomotionAnalysis CaImAn_LocomotionAnalysis Public

    Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.

    Jupyter Notebook 1 1

  6. manual-multisession-alignment manual-multisession-alignment Public

    Forked from hanshuting/manual-multisession-alignment

    A tool for manually track neurons across days

    MATLAB 1

Repositories

Showing 10 of 13 repositories
  • Cascade Public

    Calibrated inference of spiking from calcium ΔF/F data using deep networks

    HelmchenLabSoftware/Cascade’s past year of commit activity
    Jupyter Notebook 108 GPL-3.0 30 3 0 Updated Jul 2, 2024
  • Centripetal_propagation_astrocytes Public

    Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

    HelmchenLabSoftware/Centripetal_propagation_astrocytes’s past year of commit activity
    MATLAB 4 GPL-3.0 0 0 0 Updated May 23, 2024
  • wilhelm-sych-tmaze-analysis Public Forked from aleksejs-fomins/wilhelm-sych-tmaze-2023
    HelmchenLabSoftware/wilhelm-sych-tmaze-analysis’s past year of commit activity
    MATLAB 0 1 0 0 Updated Oct 19, 2023
  • mesostat-dev Public

    A library for exploratory analysis of multivariate mesoscopic neuronal signals

    HelmchenLabSoftware/mesostat-dev’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 16, 2023
  • manual-multisession-alignment Public Forked from hanshuting/manual-multisession-alignment

    A tool for manually track neurons across days

    HelmchenLabSoftware/manual-multisession-alignment’s past year of commit activity
    MATLAB 1 1 0 0 Updated Aug 15, 2023
  • contrast-marker-video-tracker Public
    HelmchenLabSoftware/contrast-marker-video-tracker’s past year of commit activity
    MATLAB 0 0 14 0 Updated Jul 15, 2022
  • dlc-scripts Public

    This library contains scripts for DeepLabCut used for joint and whisker tracking, as well as some auxiliary video processing scripts

    HelmchenLabSoftware/dlc-scripts’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 22, 2022
  • CaImAn_DendriteAnalysis Public

    Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.

    HelmchenLabSoftware/CaImAn_DendriteAnalysis’s past year of commit activity
    Jupyter Notebook 2 3 0 0 Updated Sep 16, 2019
  • CaImAn_LocomotionAnalysis Public

    Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.

    HelmchenLabSoftware/CaImAn_LocomotionAnalysis’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Nov 29, 2018
  • blink-detector-ipy3 Public

    A pipeline designed to process mouse blink videos, extract blink events and collect blinking statistics

    HelmchenLabSoftware/blink-detector-ipy3’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 3, 2018
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