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| ^.svn | ||
| ^.git | ||
| ^.make | ||
| OVERVIEW[.]md | ||
| README[.]md | ||
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| #---------------------------- | ||
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| <%------------------------------------------------------------------------ | ||
| Usage: | ||
| yml <- R.rsp::rfile(".travis.yml.rsp") | ||
| ------------------------------------------------------------------------%> | ||
| <% | ||
| pd <- local({ | ||
| pd <- NULL | ||
| function() { | ||
| if (is.null(pd)) { | ||
| pd <<- as.list(as.data.frame(read.dcf("DESCRIPTION"), stringsAsFactors=FALSE)) | ||
| } | ||
| pd | ||
| } | ||
| }) | ||
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| pkg <- function() pd()$Package | ||
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| deps <- function(what=c("Depends", "Imports", "Suggests", "SuggestsNote")) { | ||
| deps <- unlist(pd()[what], use.names=FALSE) | ||
| if (length(deps) == 0) return("") | ||
| deps <- unlist(strsplit(deps, split="[,:]"), use.names=FALSE) | ||
| deps <- gsub("[(].*[)]", "", deps) | ||
| deps <- gsub("[ \n\t]", "", deps) | ||
| deps <- setdiff(deps, c("R", "base", "datasets", "graphics", "grDevices", "methods", "parallel", "splines", "stats", "tcltk", "tools", "utils", "Recommended")) | ||
| sort(deps) | ||
| } | ||
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| cran <- local({ | ||
| pkgs <- NULL | ||
| function() { | ||
| if (is.null(pkgs)) { | ||
| repos <- "http://cran.r-project.org" | ||
| data <- available.packages(contriburl=contrib.url(repos, "source")) | ||
| pkgs <<- rownames(data) | ||
| } | ||
| pkgs | ||
| } | ||
| }) | ||
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| bioc <- local({ | ||
| pkgs <- NULL | ||
| function() { | ||
| if (is.null(pkgs)) { | ||
| repos <- "http://www.bioconductor.org/packages/devel/bioc/" | ||
| data <- available.packages(contriburl=contrib.url(repos, "source")) | ||
| pkgsA <- rownames(data) | ||
| repos <- "http://www.bioconductor.org/packages/devel/data/annotation/" | ||
| data <- available.packages(contriburl=contrib.url(repos, "source")) | ||
| pkgsB <- rownames(data) | ||
| repos <- "http://www.bioconductor.org/packages/devel/data/experiment/" | ||
| data <- available.packages(contriburl=contrib.url(repos, "source")) | ||
| pkgsC <- rownames(data) | ||
| pkgs <<- c(pkgsA, pkgsB, pkgsC) | ||
| } | ||
| pkgs | ||
| } | ||
| }) | ||
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| deps_on_cran <- function(...) { | ||
| deps <- deps(...) | ||
| deps[deps %in% cran()] | ||
| } | ||
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| deps_on_bioc <- function(...) { | ||
| deps <- deps(...) | ||
| deps[deps %in% bioc()] | ||
| } | ||
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| deps_elsewhere <- function(...) { | ||
| deps <- deps(...) | ||
| deps[!deps %in% c(cran(), bioc())] | ||
| } | ||
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| install_cran <- function(...) { | ||
| pkgs <- deps_on_cran(...) | ||
| if (length(pkgs) > 0L) { | ||
| sprintf(" - travis-tool.sh install_r %s", paste(pkgs, collapse=" ")) | ||
| } else "" | ||
| } | ||
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| install_bioc <- function(...) { | ||
| pkgs <- deps_on_bioc(...) | ||
| if (length(pkgs) > 0L) { | ||
| sprintf(" - travis-tool.sh install_bioc %s", paste(pkgs, collapse=" ")) | ||
| } else "" | ||
| } | ||
| %> | ||
| #---------------------------------------------------------------- | ||
| # AppVeyor configuration for R packages | ||
| # | ||
| # REFERENCES: | ||
| # * AppVeyor CI: https://ci.appveyor.com/ | ||
| # * r-travis: https://github.com/craigcitro/r-travis | ||
| # * covr: https://github.com/jimhester/covr | ||
| # * Coveralls: https://coveralls.io/ | ||
| # | ||
| # Validate your .appveyor.yml file at | ||
| # https://ci.appveyor.com/tools/validate-yaml | ||
| #---------------------------------------------------------------- | ||
| environment: | ||
| _R_CHECK_FORCE_SUGGESTS_: false | ||
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| # DO NOT CHANGE the "init" and "install" sections below | ||
|
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| # Download script file from GitHub | ||
| init: | ||
| ps: | | ||
| $ErrorActionPreference = "Stop" | ||
| Invoke-WebRequest http://raw.github.com/HenrikBengtsson/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1" | ||
| Import-Module '..\appveyor-tool.ps1' | ||
| install: | ||
| ps: Bootstrap | ||
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| # Adapt as necessary starting from here | ||
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| build_script: | ||
| <%= install_bioc(c("Depends", "Imports")) %> | ||
| <%= install_bioc(c("Suggests", "SuggestsNote")) %> | ||
| <%= install_cran(c("Depends", "Imports")) %> | ||
| <%= install_cran(c("Suggests", "SuggestsNote")) %> | ||
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| test_script: | ||
| - travis-tool.sh run_tests | ||
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| on_failure: | ||
| - travis-tool.sh dump_logs | ||
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| artifacts: | ||
| - path: '*.Rcheck\**\*.log' | ||
| name: Logs | ||
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| - path: '*.Rcheck\**\*.out' | ||
| name: Logs | ||
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| - path: '*.Rcheck\**\*.fail' | ||
| name: Logs | ||
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| - path: '*.Rcheck\**\*.Rout' | ||
| name: Logs | ||
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| - path: '\*_*.tar.gz' | ||
| name: Bits | ||
|
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| - path: '\*_*.zip' | ||
| name: Bits |
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