REVDEP: Ran revdep checks

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HenrikBengtsson · Jul 8, 2018 · 4d4f721 · 4d4f721
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diff --git a/revdep/README.md b/revdep/README.md
@@ -13,13 +13,12 @@
 
 # Dependencies
 
-|package   |old    |new        |Δ  |
-|:---------|:------|:----------|:--|
-|future    |1.8.1  |1.8.9-9000 |*  |
-|codetools |0.2-15 |0.2-15     |   |
-|digest    |0.6.15 |0.6.15     |   |
-|globals   |0.12.1 |0.12.1     |   |
-|listenv   |0.7.0  |0.7.0      |   |
+|package |old    |new        |Δ  |
+|:-------|:------|:----------|:--|
+|future  |1.8.1  |1.8.9-9000 |*  |
+|digest  |0.6.15 |0.6.15     |   |
+|globals |0.12.1 |0.12.1     |   |
+|listenv |0.7.0  |0.7.0      |   |
 
 # Revdeps
 
@@ -36,12 +35,12 @@
 |package                                         |version    |error  |warning |note |
 |:-----------------------------------------------|:----------|:------|:-------|:----|
 |[aroma.affymetrix](problems.md#aromaaffymetrix) |3.1.1      |       |        |1    |
-|[aroma.core](problems.md#aromacore)             |3.1.3      |       |        |2    |
+|[aroma.core](problems.md#aromacore)             |3.1.3      |       |        |1    |
 |[BAMBI](problems.md#bambi)                      |2.0.0      |       |        |1    |
 |batchtools                                      |0.9.10     |       |        |     |
-|biotmle                                         |1.4.0      |       |        |     |
+|[biotmle](problems.md#biotmle)                  |1.4.0      |       |        |1    |
 |[brms](problems.md#brms)                        |2.3.1      |       |        |1    |
-|[civis](problems.md#civis)                      |1.5.0      |       |        |1    |
+|civis                                           |1.5.0      |       |        |     |
 |[codebook](problems.md#codebook)                |0.5.9      |       |        |3    |
 |doFuture                                        |0.6.0      |       |        |     |
 |drake                                           |5.2.1      |       |        |     |
@@ -62,7 +61,7 @@
 |[penaltyLearning](problems.md#penaltylearning)  |2017.12.08 |__+1__ |        |     |
 |[phylolm](problems.md#phylolm)                  |2.6        |       |        |1    |
 |[promises](problems.md#promises)                |1.0.1      |       |        |1    |
-|[PSCBS](problems.md#pscbs)                      |0.63.0     |       |        |1    |
+|PSCBS                                           |0.63.0     |       |        |     |
 |[QDNAseq](problems.md#qdnaseq)                  |1.16.0     |       |1       |     |
 |R.filesets                                      |2.12.1     |       |        |     |
 |[robotstxt](problems.md#robotstxt)              |0.6.0      |       |__+1__  |     |

diff --git a/revdep/problems.md b/revdep/problems.md
@@ -6,9 +6,9 @@ Version: 3.1.1
 
 *   checking installed package size ... NOTE
     ```
-      installed size is 12.0Mb
+      installed size is  5.9Mb
       sub-directories of 1Mb or more:
-        R             8.4Mb
+        R             2.4Mb
         help          1.1Mb
         testScripts   1.3Mb
     ```
@@ -25,13 +25,6 @@ Version: 3.1.3
       ‘sfit’ ‘expectile’ ‘HaarSeg’ ‘mpcbs’
     ```
 
-*   checking installed package size ... NOTE
-    ```
-      installed size is  5.9Mb
-      sub-directories of 1Mb or more:
-        R   4.8Mb
-    ```
-
 # BAMBI
 
 Version: 2.0.0
@@ -44,32 +37,35 @@ Version: 2.0.0
       All declared Imports should be used.
     ```
 
-# brms
+# biotmle
 
-Version: 2.3.1
+Version: 1.4.0
 
 ## In both
 
-*   checking installed package size ... NOTE
+*   checking R code for possible problems ... NOTE
     ```
-      installed size is  6.7Mb
-      sub-directories of 1Mb or more:
-        R     3.5Mb
-        doc   2.4Mb
+    .biotmle: no visible global function definition for ‘new’
+    Undefined global functions or variables:
+      new
+    Consider adding
+      importFrom("methods", "new")
+    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
+    contains 'methods').
     ```
 
-# civis
+# brms
 
-Version: 1.5.0
+Version: 2.3.1
 
 ## In both
 
 *   checking installed package size ... NOTE
     ```
-      installed size is  5.0Mb
+      installed size is  6.7Mb
       sub-directories of 1Mb or more:
-        R      2.9Mb
-        help   1.6Mb
+        R     3.5Mb
+        doc   2.4Mb
     ```
 
 # codebook
@@ -218,20 +214,6 @@ Version: 1.0.1
     Package unavailable to check Rd xrefs: ‘purrr’
     ```
 
-# PSCBS
-
-Version: 0.63.0
-
-## In both
-
-*   checking installed package size ... NOTE
-    ```
-      installed size is  6.9Mb
-      sub-directories of 1Mb or more:
-        R         3.0Mb
-        data-ex   2.6Mb
-    ```
-
 # QDNAseq
 
 Version: 1.16.0