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README.md

illuminaio: Parsing Illumina Microarray Output Files

Installation

R package illuminaio is available on Bioconductor and can be installed in R as:

install.packages("BiocManager")
BiocManager::install("illuminaio")

Pre-release version

To install the pre-release version that is available in Git branch develop on GitHub, use:

remotes::install_github("HenrikBengtsson/illuminaio@develop")

This will install the package from source. Because of this and because this package also compiles native code, Windows users need to have Rtools installed and macOS users need to have Xcode installed.

Contributions

This Git repository uses the Git Flow branching model (the git flow extension is useful for this). The develop branch contains the latest contributions and other code that will appear in the next release, and the master branch contains the code of the latest release, which is exactly what is currently on Bioconductor.

Contributing to this package is easy. Just send a pull request. When you send your PR, make sure develop is the destination branch on the illuminaio repository. Your PR should pass R CMD check --as-cran, which will also be checked by Travis CI and AppVeyor CI when the PR is submitted.

Software status

Resource: Bioconductor Travis CI Appveyor
Platforms: Multiple Linux & macOS Windows
R CMD check Build status (release)
Build status (devel)
Build status Build status
Test coverage Coverage Status

About

πŸ”¬ R package: This is the Bioconductor devel version of the illuminaio package.

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