Bash/R: Add test making sure port4me --prepend=2000-2009 --include=1-… #79
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| on: | |
| push: | |
| paths: | |
| - 'r/**/*' | |
| - .github/workflows/check-r.yml | |
| pull_request: | |
| paths: | |
| - 'r/**/*' | |
| - .github/workflows/check-r.yml | |
| name: "R checks" | |
| jobs: | |
| check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 10 | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (R ${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'devel' } | |
| - {os: windows-latest, r: 'release' } | |
| - {os: windows-latest, r: 'oldrel' } | |
| # - {os: macOS-latest, r: 'devel' } | |
| - {os: macOS-latest, r: 'release' } | |
| # - {os: macOS-latest, r: 'oldrel' } | |
| - {os: ubuntu-latest, r: 'devel' } | |
| - {os: ubuntu-latest, r: 'release' } | |
| - {os: ubuntu-latest, r: 'oldrel' } | |
| - {os: ubuntu-latest, r: '3.6' } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## R CMD check | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| _R_CHECK_SUGGESTS_ONLY_: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install system dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install -y tidy | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| working-directory: r | |
| extra-packages: any::rcmdcheck any::covr any::jsonlite | |
| needs: check coverage | |
| - name: Install port4me | |
| run: | | |
| cd r/ | |
| Rscript -e "install.packages('.', repos = NULL, type = 'source')" | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| capabilities() | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| if: runner.os != 'Windows' | |
| run: | | |
| rcmdcheck::rcmdcheck( | |
| path = "r", | |
| args = "--as-cran", | |
| error_on = "note", | |
| check_dir = "check" | |
| ) | |
| shell: Rscript {0} | |
| - name: Check (MS Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| rcmdcheck::rcmdcheck( | |
| path = "r", | |
| args = c("--no-manual", "--as-cran"), | |
| error_on = "note", | |
| check_dir = "check" | |
| ) | |
| shell: Rscript {0} | |
| - name: Check CLI | |
| if: runner.os != 'Windows' | |
| run: | | |
| curl -L -O https://github.com/bats-core/bats-core/archive/refs/tags/v1.10.0.tar.gz && tar xf v1.10.0.tar.gz | |
| curl -L -O https://github.com/bats-core/bats-support/archive/refs/tags/v0.3.0.tar.gz && tar xf v0.3.0.tar.gz | |
| curl -L -O https://github.com/bats-core/bats-assert/archive/refs/tags/v2.1.0.tar.gz && tar xf v2.1.0.tar.gz | |
| export BATS_SUPPORT_HOME=$PWD/bats-support-0.3.0 | |
| export BATS_ASSERT_HOME=$PWD/bats-assert-2.1.0 | |
| export PATH=$PWD/bats-core-1.10.0/bin:$PATH | |
| bash --version | |
| bats --version | |
| cd r/ | |
| make check-cli | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Test coverage | |
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' | |
| run: | | |
| setwd("r") | |
| ## relative_path = ".." => reported files r/R/*.R, r/src/*.{c,h} | |
| coverage <- covr::package_coverage(relative_path = "..", quiet = FALSE) | |
| print(coverage) | |
| covr::codecov(coverage = coverage, flags = "r", quiet = FALSE) ## Upload to codecov | |
| shell: Rscript {0} |